PPT-Sequence Feature Variant Type and Evolutionary Trajectory Analysis using the Influenza

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19 July 2011 Richard H Scheuermann PhD Department of Pathology UT Southwestern Medical Center Outline Brief o verview of NIAIDSponsored Influenza Research Database

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Sequence Feature Variant Type and Evolutionary Trajectory Analysis using the Influenza: Transcript

19 July 2011 Richard H Scheuermann PhD Department of Pathology UT Southwestern Medical Center Outline Brief o verview of NIAIDSponsored Influenza Research Database IRD Comprehensive integrated database. -. Traffic Video Surveillance. Ziming. Zhang, . Yucheng. Zhao and . Yiwen. Wan. Outline. Introduction. &Motivation. Problem Statement. Paper Summeries. Discussion and Conclusions. What are . Anomalies?. Road. . Networks. Renchu . Song, . . Weiwei . Sun, . . Fudan. University. Baihua Zheng, Singapore Management University. . Yu . Zheng, . Microsoft Research, . Beijing. Background. Big Data. Huge volume of spatial trajectories cause heavy burden to data storage and data process. Resource (. ViPR. ). :. an . Open Bioinformatics Database and Analysis Resource for Human Virus Pathogen . Research. Yun Zhang. 1. , Brett . Pickett. 1. , . Eva Rab. 1. , . Jyothi. . Noronha. 1. , R. Burke Squires. Deanna M. Church . Staff Scientist, NCBI. @. deannachurch. Short Course in Medical Genetics 2013. FASTQ. BAM. VCF. VCF. FASTQ. BAM. VCF. VCF. Steve Sherry, NCBI. http://. www.bioplanet.com. /. gcat. http://. Assessment. (Boston College & University of Michigan). Gabor Marth, Goncalo Abecasis, PIs. Informatics challenges for genomic analysis. Tool . building. Facilitating . analysis. . Widening. accessibility. Rakhee Palekar, MD, MPH. PAHO/WHO. Background. Influenza A.  subtype H1, H3, . etc. Influenza B distinct lineages emerged in 1970’s B-Yamagata & B-Victoria co-circulated since 2001. -Version 11 Working Group Pagehttps//clinicalgenomeorg/working-groups/sequence-variant-interpretation/Date Approved March 18 2018Changes from v1 Clarified that confirmed/assumed is with regards to par Jessica Mester, MS, LCGC. Disclosure. I . am an employee of . GeneDx. , Inc., a wholly-owned subsidiary of OPKO Health, Inc.. Overview. Effective use of variant nomenclature in your lit search. Where to look?. Steven Harrison (. sharrison@bwh.harvard.edu. ). March 22, 2018. SVI. Updates. Reputable source (PP5/BP6) paper. Bayes paper. PVS1 (. LOF. ) recommendation. PS2/PM6 (De novo) recommendation. Reputable Source Letter to the Editor . Phylogenetics. is the study of the evolutionary history of living organisms using . treelike diagrams . to represent pedigrees of these organisms. .. The tree branching . patterns. representing . the evolutionary divergence are referred to as . Sequencing. . Paolo Aretini . Senior . Researcher. Fondazione Pisana per la Scienza. School on . Scientific. Data Analysis,. 25-28 . November. 2019. Scuola Normale Superiore . Outline. Introduction. Acid Substitutions. Emma . Roth. 1. , Brian Aevermann. 1. , . Vinita . Puri. 2. , . Nadia . Fedorova. 2. , . Susmita . Shrivastava. 2. , . Lihui Wu, Paolo . Amedeo. 2. , . Rafael . Medina. 3. , . Gene . . Nicholas Abel. nabel@bcm.edu. Evolutionary Trace (ET): Uses evolution to quantify importance of a sequence position. (. Tataru. et al 2017, Castellano et al, 2019; Sanchez-Garcia, 2017; . Katsonis. PROBAND. REQUEST FORM. Please provide the following information. We cannot perform your test without ALL of this information. PLEASE PRINT ALL ANSWERS. * Required information . **Please refer to the special requirements for prenatal samples on the Instructions for Sample Submission page..

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