PPT-High Performance Computing for genomic applications Using genomic software on Euler

Okoniewski Samuel Fux Manuel Kohler 112217 1 High Performance Computing for genomic applications Using genomic software on Euler Michal Okoniewski Scientific IT ETH m odule load. “Computing . is changing more rapidly than ever before, and scientists have the unprecedented opportunity to change computing . directions” . “In . 20 or 30 years, you'll be able to hold in your hand as much computing knowledge as exists now in the whole city, or even the whole world. Fikret Isik. Associate . Professor. September 16, 2013. Genomic BLUP - UofCopenhagen. 1. Cooperative Tree Improvement Program. North Carolina State University, Raleigh, . USA. Outline. Background. Realized genomic relationships. livestock. Dr Indrasen Chauhan. Scientist, CSWRI, Avikanagar. Tonk-304501. – . B. ased . on individual records, pedigree or progeny performance or family performance. . SI=WT9 +1DMY90. Conventional selection . Early genomic theory. Nejati-Javaremi. et al (. 1997. ) tested use of genomic relationship matrix in BLUP. Meuwissen et al (. 2001. ) tested linear and nonlinear estimation of . haplotype. effects. Genotypes are Useful for More Than Genomic Evaluation Uses for genotypes Ancestor discovery within breeds Inheritance tracking for chromosomes Mating programs Genomic inbreeding, dominance Fertility defects – haplotypes and QTLs exposomic. findings to realize the precision medical care in Tohoku Medical Megabank. 0. Division of . Bioclinical. . Imformatics. Tohoku Medical Megabank Organization, . Tohoku University. Hiroshi Tanaka, . livestock. Dr Indrasen Chauhan. Scientist, CSWRI, Avikanagar. Tonk-304501. – . B. ased . on individual records, pedigree or progeny performance or family performance. . SI=WT9 +1DMY90. Conventional selection . George Wiggans, CDCB Technical Advisor. Highlights of U.S. system. Over half a million animals genotyped in 2016. 67% of AI breedings to genomic bulls. Genomic relationship between genotyped cows and marketed bulls available. Dina Paltoo, Ph.D., M.P.H.. NIH Office of Science Policy. Laura Lyman Rodriguez, Ph.D.. National Human Genome Research Institute. October 4, 2017. Housekeeping. Participants must register to join the webinar. Dairy Cattle. 9 million cows in US. Attempt to have a calf born every year. Replaced after 2 or 3 years of milking. Bred via AI. Bull semen collected several times/week. Diluted and frozen. Popular bulls have 10,000+ progeny. Laura Yarram-Smith. SWGLH Solid Tumour Laboratory Lead. 20/09/2019. Breast Cancer Genomics. Genomics in England and Genomic Lab Hub. Genomic Test Directory. Genomic Biomarkers in Breast Cancer. Future technologies . 1 Agilent DNF - 4 8 8 HS Kit Quick Guide for the Fragment Analyzer Systems The Agilent Fragment Analyzer systems are automated capillary electrophoresis platforms for scalable, flexible, fast, and Dr. Breno Fragomeni. Assistant Professor. Animal Science - UConn. Where are the labels?. Introduction . Why genomic prediction?. Higher accuracy. Shorter generation interval . Higher genetic gain. Genetic gain per year. biology – lessons from dairy cattle breeding. Dairy Cattle. 9 million cows in US. Attempt to have a calf born every year. Replaced after 2 or 3 years of milking. Bred via AI. Bull semen collected several times/week. Diluted and frozen.