Provided by WV-INBRE. Mary E. Davis, Ph.D.. Bioinformatics Core Director. Outline. Overview of WV-INBRE. Technology supported. Agilent microarray. Illumina. HiSeq1000 (Next Generation Sequencing). Bioinformatics analysis resources supported. ID: 545649
DownloadNote - The PPT/PDF document "Bioinformatics Resources" is the property of its rightful owner. Permission is granted to download and print the materials on this web site for personal, non-commercial use only, and to display it on your personal computer provided you do not modify the materials and that you retain all copyright notices contained in the materials. By downloading content from our website, you accept the terms of this agreement.
Bioinformatics Resources
Provided by WV-INBRE
Mary E. Davis, Ph.D.
Bioinformatics Core Director
Slide2Outline
Overview of WV-INBRE
Technology supported
Agilent microarray
Illumina
HiSeq1000 (Next Generation Sequencing)
Bioinformatics analysis resources supported
Ingenuity Pathways Analysis (IPA)
Partek
Genomics Suite
(Galaxy)
Slide3Slide4Slide5Technology
MicroarrayAgilent (Marshall Univ—WV-INBRE)Affymetrix (WVU Neuroscience CoBRE)Next Generation SequencingIllumina HiSeq (Marshall Univ—WV-INBRE)Illumina MiSeq (WVU Neuroscience CoBRE)
Slide6Bioinformatics Tools: Ingenuity
Slide7Slide8IPA Function Result
Slide9IPA: Effects on Function
Slide10IPA: Upstream Regulators
Slide11IPA: Canonical Pathways
Slide12Slide13IPA: Gene Annotation
Slide14Example of Findings in Gene
Annotation
Ingenuity scientists read literature and enter results using a structured vocabulary. This, in combination with disease and function ontologies, is basis for relationships in pathways.
Slide15IPA: Pathways
Slide16
Next Slides
Nml bioinformatics service—licensed bioinformatics tools
Bioinformatics core facility at unh: from experimental desi
A bridge to bioinformatics tools
Bioinformatics bioinformatics is an applied science that
Pier luigi
Predicting
Integrated bioinformatics
Big data in biology: a focus on genomics