first steps in global data publishing integration Roman Khalikov Leading Engineer of the IT Department Zoological Institute of the Russian Academy of Sciences Saint Petersburg romankhalikovzinru ID: 760283
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Slide1
Zoological Institute of the Russian Academy of Sciences
—
first steps in global data publishing integration
Roman Khalikov
Leading
Engineer of the IT Department
Zoological Institute of the Russian Academy of
Sciences, Saint Petersburg
roman.khalikov@zin.ru
Slide2ZIN Taxonomic Databases: 30
Years
Background
▪
ZOOCOD
—
the data standard for taxonomic
tables
creation and representation
of multilevel
hierarchies
in
relation
databases
▪
Client-server database management
system
(MS
SQL
Server
—
server
side
)
and universal
web-interface (client side
—
ASP,
cross-platform
script
language JavaScript
,
AJAX)
▪
ZooDiv
taxonomic classifier
—
the
kernel of all
IT
zoological
projects at the Zoological
Institute
Slide3United Classifier and On-line Data
Publishing
▪
Z
oo
D
iv
—
All-Russian
Information
Storage
and Retrieval Biodiversity System
131730
taxonomic
records of
41
ranks
http://
www.zin.ru/ZooDiv/animals.asp
▪
ArcCoML
—
Arctic Census of Marine Life
http
://www.zin.ru/projects/arccoml/rus/index.html
▪
EcoAnt
—
Census of Antarctic Marine Life
http://www.zin.ru/projects/ecoant/index.html
▪
HerpNet
http://www.herpnet.org
Slide42006: GBIF
Seed
Money
Statement of work:
“ZIN
will be extensively
involved
in
this project. They will be contributing 22000 records of amphibian specimens to GBIF and
HerpNET
by making these available through a provider at their institution.
They will be digitizing and
georeferencing
all specimens that funds will allow, using a standard database format and using
BioGeomancer
to
georeference
.”
Slide52006: Key
Steps of the
Project
▪
Digitalization
of ZIN collection catalog records
▪
Latinization of specimens localities
▪
Georeferencing
of specimens localities
▪
Georeferenced data verification by MVZ staff
▪
Georeferenced data integration into ZIN database
to make available both for internal use and for the
HerpNET
on-line distributed information
network
by means of dedicated
DiGIR
-provider server
(still works… :)
Slide62015: Russian Foundation for Basic Research
(RFBR) Grant
▪
Digitizing of
ZIN research
collections
within the
framework
of RFBR №
15-29-02457 «
The
collections
of
the Zoological
Institute as an important
tool
and
information
basis
of fundamental biological
research
»
(
project leader Dr. Ananjeva N.B.)
▪
ZIN collections
—
>
60 million of storage
units
▪
The first
phase
—
several
tens of thousands of
type
specimens, 8 model groups
of
collections
(
Pogonophora
,
Coleoptera
, Lepidoptera,
Ophiuroidea
,
Siphonaptera
, Amphibia,
Reptilia
, Mammalia)
▪
ZIN Research Collections portal
http://
www.zin.ru/collections/
Slide72015: GBIF Data
Publishing —
DiGIR + IPT
▪
GBIF IPT
Deployment
http
://ipt.zin.ru:8080/ipt/
▪
Amphibian
specimens (
DiGIR
installation)
http://
www.gbif.org/dataset/7e34ea34-f762-11e1
-a439-00145eb45e9a
▪
Ophiuroidea
collections of the Zoological
Institute
Russian
Academy of
Sciences
(IPT
installation)
http://
www.gbif.org/dataset/98333cb6-6c15-4add
-aa0e-b322bf1500ba
Slide82016:
Future Plans
▪
IPT debug
and improvement expectation
—
problem with dataset contacts order should be fixed
▪
Several
occurrence
datasets
for different taxonomic
groups
▪
Sample-based
dataset for testing purposes
▪
Komarov
Botanical Institute
RAS
endorsement
and its registration as a publisher within ZIN IPT