PPT-Sirepo: Providing Simulation Interface and Reproducibility

Chris Hall BLAST Workshop May 7 9 2018 1 Challenges in Computational Science BLAST Workshop May 7 9 2018 2 Code installation and maintenance Different architecturesoperating systems. Thomas Steckler. FORCE2015, Oxford, 12-13 Jan 2015. 2. The Pillars of Good Scientific Practice. Reproducibility. Robustness. Relevance. SCIENCE. 3. Should Scholarly Research Aim . for . Reproducibility or Robustness?. Model Sharing Group Presentation. Interagency Modeling and Analysis Group. Herbert Sauro. Maxwell Neal. University of Washington. Definitions. Repeatability. The ability for. an individual . to show that an experiment, repeated using the same material and equipment, yields the same statistical result.. . from . DARPA’s. . Progams. in. Human Language Technology. Mark . Liberman. University of Pennsylvania. http://ling.upenn.edu/~myl. The story begins in the 1960s…. … with two bad reviews by John Pierce,. to work . reproducibly. More publications, more grants, more awesome!. Systems Genetics of Cancer. Genetic variation. In people. In . tumours. In clones. Phenotypic variation. Tumour. subtypes. Aggressiveness. Lessons from the . Madagascar Project. Sergey Fomel. Jackson School of Geosciences. The University of Texas at Austin. ICERM Reproducibility . in Computational and Experimental Mathematics. 12/13/2012. Marco . Canini (KAUST) and Jon Crowcroft (. University of Cambridge). What it takes to do reproducible research?. It is actually hard work for both authors and reproducers. Produce solid artifacts. Create, package, share reproducible experiments. Justin Y. Shi | . shi@temple.edu. Temple University. reproducibility@XSEDE. | An . XSEDE14 . Workshop | July . 14, . 2014 | Atlanta. , GA. Why . Decoupling. can . I. mprove . P. rogram Reproducibility?. What is . accuracy. ?. Accuracy. refers to how . close. a measurement is to the true or actual value.. Example: A dart thrower tries to get the darts as close to the bull's-eye as possible. He wants to make . Marco . Canini (KAUST) and Jon Crowcroft (. University of Cambridge). What it takes to do reproducible research?. It is actually hard work for both authors and reproducers. Produce solid artifacts. Create, package, share reproducible experiments. Matthias Flittner. 1. , Robert Bauer. 1. ,. Amr . Rizk. 2. , . Stefan . Geißler. 3. , . Thomas . Zinner. 3. , . Martina . Zitterbart. 1. 1. Karlsruhe Institute . of. Technology, . 2. Technische . Universität Darmstadt, . contactextendecomLets be more efficient with CIVASCRIPTYou can save significanttime with CIVAScript especially for largescale computationsand analysis workAutomate your calculation and analysis loopsI PNNL-SA-114460November 2015Velo provides a rich infrastructure including a tool registry and rich client interface for integrating third-party applications Tools can range from desktop applications to role of librarians in addressing biomedical research reporting and reproducibility issues a call to actionShona KirtleySenior Research Information Specialist EQUATOR Network Centre for Statistics in PI: Maksim . Rakitin. , . Co-PIs: Mikhail . Fedurin. , Yonghua Du. Brookhaven National Laboratory. LDRD#22-031 PS/EPS (“Received”). January 20, 2022. Experiment Goals at ATF:. Collect e-beam tunning data (PS set/read, BPM read ).