PPT-Comparing species tree estimation with large anchored

Author : lois-ondreau | Published Date : 2017-03-18

phylogenomic and small Sangersequenced molecular datasets an empirical study on Malagasy pseudoxyrhophiine snakes Sara Ruane Christopher J Raxworthy Alan R Lemmon

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Comparing species tree estimation with large anchored: Transcript

phylogenomic and small Sangersequenced molecular datasets an empirical study on Malagasy pseudoxyrhophiine snakes Sara Ruane Christopher J Raxworthy Alan R Lemmon Emily Moriarty Lemmon and Frank T . All these partitioned analyses of concatenated data sets make the assumption . t. hat all the genes share a common gene tree.. However there are several important reasons that phylogeny estimates from separate genes might be incongruent.. Phylogenomics. . (Phylogenetic estimation from whole genomes). Orangutan. Gorilla. Chimpanzee. Human. From the Tree of the Life Website,. University of Arizona. Species Tree. Large-scale statistical phylogeny estimation. Algorithmic Computational Genomics. Tandy Warnow. Departments of Bioengineering and Computer Science. http://. tandy.cs.illinois.edu. Course Details. Office hours: Mondays 10-11:45 in 3235 Siebel. Course webpage: . BioE. 598 . Algorithmic Computational Biology. Phylogenomics. Genome-scale evolution. The multi-species coalescent, and gene tree incongruence due to incomplete lineage sorting (ILS). Estimating species trees in the presence of ILS. Algorithmic Computational Genomics. Tandy Warnow. Departments of Bioengineering and Computer Science. http://. tandy.cs.illinois.edu. Course Details. Office hours: . To be determined. Course webpage: . Tandy Warnow. Departments of Computer Science and Bioengineering. University of Illinois at Urbana-Champaign. Large-scale statistical phylogeny estimation. Ultra-large multiple-sequence alignment. Estimating species trees from incongruent gene trees. Tandy Warnow. The University of Illinois at Urbana-Champaign. Orangutan. Gorilla. Chimpanzee. Human. From the Tree of the Life Website,. University of Arizona. Phylogeny. (evolutionary tree). DNA Sequence Evolution. Tandy Warnow. The University of Texas at Austin. Orangutan. Gorilla. Chimpanzee. Human. From the Tree of the Life Website,. University of Arizona. Phylogeny. (evolutionary tree). Applications. . of Phylogeny Estimation . Tandy Warnow. Departments of Bioengineering and Computer Science. http://. tandy.cs.illinois.edu. Course Details. Office hours: . To be determined. Course webpage: . http://tandy.cs.illinois.edu/598-. Tandy Warnow. The University of Illinois. Avian . Phylogenomics. Project. G . Zhang, . BGI. . Approx. 50 species, whole genomes. 8000+ genes, . UCEs. MTP Gilbert,. Copenhagen. S. . Mirarab. Md. species trees . from genome-scale data. Tandy Warnow. The University of Illinois. Orangutan. Gorilla. Chimpanzee. Human. From the Tree of the Life Website,. University of Arizona. Phylogeny. (evolutionary tree). All these partitioned analyses of concatenated data sets make the assumption . that all the genes share a common gene tree.. However there are several important reasons that phylogeny estimates from separate genes might be incongruent.. University of Illinois at Urbana-Champaign. http://. tandy.cs.Illinois.edu. Orangutan. Gorilla. Chimpanzee. Human. From the Tree of the Life Website,. University of Arizona. Species Tree. . and . Metagenomics. Tandy Warnow. The Department of Computer Science. The University of Texas at Austin. The “Tree of Life”. Applications of phylogenies to:. . protein structure and function. .

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