PPT-Analysis of environmental genomes using Pathway Tools

Steven Hallam University of British Columbia SRI International 2013 Overview Through the looking glass Environmental PathwayGenome Databases MetaPathways Pipeline Development 2 Metabolism. Very complex shape, requiring 20 gene products for assembly. - . Capsid. (head), contains linear dsDNA genome. - . Tail. , consists of sheath plus internal tube. Bacteriophage T4. Figure 11.2. Phage T4 binds to . How to identify circularly permuted genomes, physical ends, 3’ overhangs, terminal repeats, and nicks.. Circularly Permuted Genomes. Some phages have circularly permuted genomes. This means a linear concatamer of phage DNA is synthesized, used to fill a phage head, then cut when the head is full. Generally, one head will fit more than 100% of a genome, say, 103-110%. This ensures that wherever the DNA is cut, at least one working copy of each gene is present.. Production Genomics Facility. “. User facility. providing high-throughput DNA sequencing & analysis in support of DOE missions in alternative . energy. , . carbon cycling . & . bioremediation. Comparative genomics of sponges, sea anemones, and multicellular pancakes. Mansi Srivastava. Rokhsar Lab, Department of Molecular and Cell Biology, UC Berkeley. Reddien Lab, Whitehead Institute for Biomedical Research. DNA. Double helix. Bases. Sequence. Gene . Key words. Genome . Genome sequencing. Species . Human Genome Project. DNA. is found in the nucleus of a cell. It is a long molecule that carries a set of codes to make you unique.. George Varghese (MSR, UCSD). ( with V. . Bafna. , C. . Kozanitis. , UCSD). Interpreting the Genome. Technology Review . 2009. New technologies will soon make it possible to sequence thousands of human genomes. Now comes the hard part: understanding all the data.. Ann . Lesnefsky. (Stanford University). Sarah Douglas (Harvard University). Julian . Damashek. (Stanford University). Bradley . Tolar. (University of Georgia). Hopkins Microbiology Course 2011. Comparative . Faculty of Science. Lagos State University. . Databases of Insect genomic resources: a review . Abdulazeez. Giwa. 1. *, . Oluwasegun. Gbenle. 2. and . Abiodun. . Denloye. 1. . . 1. Department of Zoology and Environmental Biology, Lagos State University, . Alex Rodriguez * Dinanath Sulakhe Elizabeth Marland arodri7@mcs.anl.gov sulakhe@mcs.anl.gov marland@mcs.anl. Veronika Nefedova Gong Xin Yu Natalia Maltsev * nefedova@mcs.anl.gov gxyu@mcs.anl.g QuestionsCircle the Best AnswerWould you rather take an Englishor Social Science class OR a Mathor Scienceclass Circle your first choiceCircle one columnEnglish orSocial ScienceclassEx History geograp Circularly Permuted Genomes. Some phages have circularly permuted genomes. This means a linear concatamer of phage DNA is synthesized, used to fill a phage head, then cut when the head is full. Generally, one head will fit more than 100% of a genome, say, 103-110%. This ensures that wherever the DNA is cut, at least one working copy of each gene is present.. Beyond the Genome 2012. Informatics Workshop, Sep 27, 2012. Josh Stuart, UC Santa . Cruz. “It . is entirely in line with the accidental nature of mutations that . … . the vast . majority [are] . detrimental. Genomic Medicine. Update Session. Provided by Catherine Carpenter-Clawson Programme Manager, WE . GMC with Tracie Miles Genomics Champion RUH, Bath.. Courtesy . of . Genomics England. The Human Genome Project. Here is the list of best and high quality automotive tools for your car which you must need in your tool box. Shop online now from Leicester Motor Spares.