PPT-tools for synteny analysis

synteny sensu stricto no gene order information collinearity recognizable imperfect synteny ltgt conserved synteny s yntenic chromosomes syntenic blocks perfect imperfect synteny thresholds. Whole Genome Assembly. How it works. How to make it work (exercises). Synteny alignments. How it works. How to make it work (exercises). Transcriptome. assembly (RNA-. Seq. ). How it works. How to make it work (exercises). Frank W. Davis. National Center for Ecological Analysis and Synthesis. UC Santa Barbara. 2 mi. 2 mi. 1 mi. 1 mi. Biodiversity in fragmented habitats. Landscape Goals. Assessments. abiotic. biotic. cultural. Dr Chris Dore . Chair of the TFEIP . Contents. Accuracy In Emission Inventories. Principles of Uncertainty. Uncertainty Tools. Conclusions. Discussion Points. Does it matter?!. Actually. , it is . not very important for demonstrating compliance with targets. Assessment. (Boston College & University of Michigan). Gabor Marth, Goncalo Abecasis, PIs. Informatics challenges for genomic analysis. Tool . building. Facilitating . analysis. . Widening. accessibility. WCA-B401. Channel 9 – Defrag Tools. http://channel9.msdn.com/Shows/Defrag-Tools. The IT Help Desk call…. “Production is acting a bit weird – can you help?”. “Does it have any developer tools installed?”. (How to make your code ROCK!). Darryl Parks. This Presentation is About. About Code Analysis, not Run-Time monitoring. This Presentation is NOT about Performance Analysis Tools. Profiling. Jconsole. or other Dynamic Memory Monitoring. Nikos. . Kyrpides. Genome . Biology . Program (GBP). DOE Joint Genome institute. IMG. Genes. Genomes. Functions. Metadata. Clusters. SNPs. Proteomics. Regulons. Transcriptomes. IMG Systems Data Types. James Kovacs. JamesKovacs.com. jkovacs@post.harvard.edu. September 30, 2006. Photoshopped. !. by Justice Gray 2006. Agenda. The Holy Trinity. Source Control. Code Analysis Tools. Build Tools. Debugging Tools. -- the U.S. . n. ational experiences . Jia Li. Climate Change Division. U.S. Environmental Protection Agency. Climate Action 2016 Forum. May 4, 2016. 1. Executive . Order . 13514 . Federal Leadership in . Process Analysis Tools. 4 Tools in your Quality Tool Kit. F. F. M. S. Process Analysis Tools. 4 Tools in your Quality Tool Kit. Flowchart. F. M. S. Process Analysis Tools. When . you want to understand a work process or some part of a process, these tools can help. Decision Support Methodology forSelecting Traffic Analysis ToolsPUBLICATION NO FHWA-HRT-04-039JULY 2004Research Development and TechnologyTurner-Fairbank Highway Research CenterMcLean VA 22101-2296Tr Workbench. Organized and Hosted by the Data Management. and Resource Repository (DMRR. ). Sai Lakshmi Subramanian. Data Management and Resource Repository (DMRR) – ERCC. Baylor College of Medicine. Sankoff. , 1996. Presented by: Suzy Sun. Synteny. :. Two . genes are . syntenic. if . they are assigned . to the same chromosome. Introduction . We know more about . chomosomal. gene assignment rather than where exactly these genes are located on the . Motivations. W. ho’s going to build large ARM systems and run HPC problems on them. . W. hat do people care about . wrt. binary instrumentation? Want to prioritize. . Collect feedback for colleagues on interest and how to use ARM tools and clusters. .