PPT-Computational Genomics WS

McDonald Kreitman Test Changes in Protein Coding Sequence 11142017 Review of Tajimas D Skews in the Allele Frequency Spectrum Solutions to Last Weeks Exercises McDonald Kreitman Test. NHGRI strategic plan. What does the NIH think genomics should be for the next 10 years?. [Nature, Feb. 2011]. The Essence of Genomics. (according to NHGRI). Comprehensiveness. . Genomics . aims to generate complete data sets. Although relatively easy to define and measure for a genome sequence, attaining comprehensiveness can be more challenging for other targets (for example, functional genomic elements or the ‘proteome’). Class Overview. web site: www.cs.vt.edu/~kafura/CS6604. Origins. Term first used by Seymour . Papert. (1996) . [Snow 2012]. “. In . both . cases the computer used as a tool effectively . leads . to a solution, but in neither does the . NRC Report on Nature/Scope of CT. web site: www.cs.vt.edu/~kafura/CS6604. NRC Report. Sponsored by National Research Council. First of two reports. Not intended to produce or reflect a consensus among participants. selection, . regulation, epigenomics, . disease. Manolis Kellis. MIT Computer Science & Artificial Intelligence Laboratory. Broad Institute of MIT and Harvard. Recombination breakpoints. Family Inheritance. NGS analysis. Ravi Madduri. madduri@anl.gov. Joint work with Paul . Davé. , Lukasz . Lacinski. , Alex Rodriguez, . Dinanath. . Sulakhe. , Ryan Chard and Ian Foster. Globus Genomics is developed, operated, and supported by researchers, developers, and . Authors: Kyu . Han . Koh et. al.. Presented . by : . Ali Anwar. ABOUT ME. B.Sc. Electrical Engineering, University of Engineering and Technology Lahore, Pakistan. M.Sc. Computer Engineering. , University of Engineering and Technology Lahore, . 2012-2017. A Public Health Stakeholder Consultation. Co-Authors. Toby . Citrin. , JD. tcitrin@umich.edu. Center for Public Health and Community Genomics. Stephen M. . Modell. , MD, MS. mod@umich.edu. Overview and Capabilities: . . High Throughput Sequencing Facility (HTSG). Functional Genomics M. ammalian Genotyping Core (MGC). Corbin Jones. Faculty Director. Piotr . Meiczkowski . Technologies . Alan . Christoffels. South African Medical Research Council Bioinformatics Unit, South African National Bioinformatics Institute, University of the Western Cape, South Africa, Secretariat: Public Health Alliance for Genomic Epidemiology. . Carl Pray. 1. Can advances in biology transform Asian agriculture? Challenges are large. Food production . Productivity growth . Crises – . Biological -Africa Swine Fever, corn stalk borer, fall armyworm, wheat rust. . . Shawneequa L. Callier, JD, MA . Associate Professor. Clinical Research and Leadership. School of Medicine and Health Sciences. George Washington University. Special Volunteer. Center for Research on Genomics . Bella Starling. Director of Public . Programmes. , CMFT. Wellcome. Trust Engagement Fellow. About me. Career. Scientist (neuroscience, genetics, stem cells). Science writer. Biomedical ethics. Public engagement, . Ian Green. Clinical Engagement and Education Business Manager. Strategy. Work undertaken by Genome One (part of the . Garvan. Institute). Work underway. Completion date . –. 17. th. , March 2017. Ravi Madduri. madduri@anl.gov. Joint work with Paul . Davé. , Lukasz . Lacinski. , Alex Rodriguez, . Dinanath. . Sulakhe. , Ryan Chard and Ian Foster. Globus Genomics is developed, operated, and supported by researchers, developers, and .