PPT-V9 – Functional annotation

Program for today Have all genes been studied with the same intensity Functional annotation of genes gene products Gene Ontology GO . Thesis Proposal. Tao Huang. taohuang@cs.indiana.edu. Outline. Introduction. Motivation. Related System Survey. Research Issues. Milestones. Contributions. Introduction. Annotation Definitions. A commentary on an object that: (Cousins et al. 2000). Fall 2012. C. ommunity . A. ssessment of. C. ommunity . A. nnotation with . O. ntologies. (CACAO). Spring 2010. Fall 2010. Spring 2011. Fall 2011. Institutions. TAMU. TAMU. UCL. TAMU. Miami (Ohio). Archaea. Matthew Blow. mjblow@lbl.gov. Adam . Deutschbauer. Morgan Price. Kelly Wetmore. Adam . Arkin. Cindi. Hoover. Feng. Chen. Jim Bristow. Deutschbauer. lab, LBNL. JGI. G. ene function annotation . PropBank. . Outline. Introduction to the project. Basic linguistic concepts. Verb & Argument. Making information explicit. Null arguments. Tasks to be carried out. Timesheets, tips. Creation of Resources. :DAVID. D. atabase for . A. nnotation, . V. isualization and . I. ntegrated . D. iscovery . (. DAVID ). Functional Annotation Tool. . Gene Ontology. Protein interaction . Protein domain. Pathway. 2. n-gram language model. 3. classifier. Studying Humour Features - Bolla, Whelan. Guidelines. define tags and describe how they should be applied. Data. 500 reviews of varying length (>7300 sentences). ASM-JGI. . 2012. Transferring information to . new genomes. Database. Lists of genes. Known functions of. Homologs or subsets. New knowledge. Curation is rate limiting. Literature. Datasets. Biocurators. Thesis Proposal. Tao Huang. taohuang@cs.indiana.edu. Outline. Introduction. Motivation. Related System Survey. Research Issues. Milestones. Contributions. Introduction. Annotation Definitions. A commentary on an object that: (Cousins et al. 2000). Source:. Editors. Title:. DEL05.x: Annotation tool - Draft requirements study for an annotation tool - Att.1: Presentation. Purpose:. Discussion. Contact:. Marc Lecoultre. E-mail: . ml@mllab.ai . Abstract:. Benefit #1 of annotation: . helps you to stay . awake. We all know that sometimes the reading selections can be a tad bit boring right…….. Annotating the text keeps your . brain. . working. . and it keeps you . Tool. (. TART). Outline. Pragmatics & Corpora. Speech/Dialogue-Act Annotation. The DART Approach. From DART to . TART. Observations & Issues. Intended Features. Potential Applications. Pragmatics & Corpora. However, genomes are large and complex and visualizing this information is not easy. You need to imagine that the raw annotation information, by itself, can be contained in a text file, which could include positional information (coordinates relative to the reference genome) and different features (e.g. annotation type – gene, mRNA, intron/exon, variant, UTR, etc.). Program for today:. - . Functional. . annotation. . of. genes/. gene. . products. : Gene . Ontology. (GO). - . significance. . of. . annotations. : . hypergeometric. . test. - (. mathematical. The . BovReg. project received funding from the European Union’s Horizon 2020 research and innovation . programme. under grant agreement No 815668,. September 2019 – February 2024. Coordinator Christa Kühn FBN .