PPT-Functional Annotation of Animal Genomes (FAANG)

Ravi N Ravindranath PhD Fertility and Infertility Branch Eunice Kennedy Shriver National Institute of Child Health and Human Development National Institutes of Health Is FAANG important for NIH. Denovo genome Denovo genome outline outline novogenome from contigs from assembled contigs annotation Denovo genome Denovo genome Reads contig Gene Gene Annotation Gene Annotation Forgene Archaea. Matthew Blow. mjblow@lbl.gov. Adam . Deutschbauer. Morgan Price. Kelly Wetmore. Adam . Arkin. Cindi. Hoover. Feng. Chen. Jim Bristow. Deutschbauer. lab, LBNL. JGI. G. ene function annotation . Massimo Poesio. University of . Essex. Part 1: Intro, . Microtask. . crowdsourcing. ANNOTATED CORPORA: . AN ERA OF PLENTY?. With the release of the . OntoNotes. and ANC corpora for English and a number of corpora for other languages (Prague Dependency Treebank especially) we may think we won’t need to do any more annotation for a while . . AGeS: A Software System for Annotation and Analysis of Genome Sequences . *jaques.reifman@us.army.mil (301) 619-7915 . Kamal Kumar, Valmik Desai, Li Cheng, Maxim Khitrov, Deepak Grover, Ravi Vijaya Satya, Chenggang Yu, Nela Zavaljevski, and . Triplets to Sentence Fingerprints. Motivation. . Scientific concepts are annotated with controlled vocabulary (CV) terms from ontologies such as Gene Ontology (GO) and Plant Ontology (PO). . Our Arabidopsis specific tool - . Philip . McParlane. , Yashar Moshfeghi and Joemon M. Jose. University of Glasgow, UK. http://www.dcs.gla.ac.uk/~philip/. p.mcparlane.1@research.gla.ac.uk. Motivation for annotating images. Problems with existing automatic image annotation collections. RuSSIR Young Scientist Conference,. 24-28| 2015| St. Petersburg, Russia. Arshad Khan. School of Electronics & Computer Science,. University of Southampton, UK. Overview. Searching in online repositories of multidisciplinary research data is becoming a challenge due to the volume and types of data being published every year. 2014 Workshop. G . × . E ANALYSIS. Diego . Jarquin. Chicago, IL. December 10. Variance components for common . inbreds. and hybrids. Genomes to Fields . Inbred – Pollen DAP. Inbred – Plant height. Thesis Proposal. Tao Huang. taohuang@cs.indiana.edu. Outline. Introduction. Motivation. Related System Survey. Research Issues. Milestones. Contributions. Introduction. Annotation Definitions. A commentary on an object that: (Cousins et al. 2000). Genomic Medicine. Update Session. Provided by Catherine Carpenter-Clawson Programme Manager, WE . GMC with Tracie Miles Genomics Champion RUH, Bath.. Courtesy . of . Genomics England. The Human Genome Project. Skin SSG . May 2018. Catherine Carpenter-Clawson, Programme Manager, WE GMC. Courtesy of Genomics England. From . Genetics . to . Genomics. Genetic testing = single gene. (. s. ). or panels. . Exome sequencing = coding DNA . However, genomes are large and complex and visualizing this information is not easy. You need to imagine that the raw annotation information, by itself, can be contained in a text file, which could include positional information (coordinates relative to the reference genome) and different features (e.g. annotation type – gene, mRNA, intron/exon, variant, UTR, etc.). Program for today:. - . Functional. . annotation. . of. genes/. gene. . products. : Gene . Ontology. (GO). - . significance. . of. . annotations. : . hypergeometric. . test. - (. mathematical. Peter Harrison. Genome Analysis Team Leader. EMBL-European Bioinformatics Institute. peter@ebi.ac.uk. @. peterwharrison. The Data Coordination Challenge. The global FAANG initiative consists of hundreds of researchers, across multiple funded projects and from many institutions spread all over the world..