EEG and ECOG Data Nathan Intrator Computer Science TelAviv University cstauacilnin Yaari amp Beck 2002 Lopes da Silva et al 2003 Collaborators TAU Hospital Talma Hendler Itzhak Fried Miri ID: 785344
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Slide1
Epilepsy Prediction fromEEG and ECOG Data
Nathan IntratorComputer ScienceTel-Aviv Universitycs.tau.ac.il/~nin
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Collaborators
TAU Hospital
: Talma Hendler, Itzhak Fried, Miri
Noifeld
,
TAU
: Eshel Ben Jacob, Ilana
Podipsky
, Andrey Zhdanov
Outline
The Epilepsy Problem, Clinical Terms, and need for predictionSensing, eeg, ecog, depth electrodesAnimal modelsWaveletsEshel
Vagus nerveHeart/EEG, HRV, HS
Complex Network Theory
bocaletti
Da Silva / Cerotti, Correlation, My contribution – level sets
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
boaz@eng.tau.ac.il
Slide3Seizure prediction by non-linear time series analysis of brain electrical activity
Ilana Podlipsky
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide4Epilepsy
EpilepsySynchronous firing of neurons which create high amplitude electrical discharges; this ‘storm’ inhibits other neural signals from getting through and disables function areas of the brainStatisticsEveryone's brain has the ability to produce a seizure under the right conditions1 in 20 will have an epileptic seizure at some time in their lifeTreatmentOnce diagnosed with epilepsy, people are generally given anti-epileptic medication. With the appropriate treatment, up to 70% of people could be seizure free.
Characteristics / symptoms
Seizures (40 different types)
‘Aura’, a sensory hallucination, often precludes a seizure
EEGRecording of neural activity of targeted neurons / neural regions in brainOutputs brainwaves with associated rhythms and frequencies
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide5Types of Epilepsy
Partial Seizures (Most Common) VideoSimple partialynchronous firing of neurons which create high amplitude electrical discharges; this ‘storm’ inhibits other neural Complex partial
Statistics
Everyone's brain has the ability to produce a seizure under the right conditions
1 in 20 will have an epileptic seizure at some time in their life
AbsenceOnce diagnosed with epilepsy, people are generally given anti-epileptic medication. With the appropriate treatment, up to 70% of people could be seizure free.
Characteristics / symptomsSeizures (40 different types)
‘Aura’, a sensory hallucination, often precludes a seizure
EEG
Recording of neural activity of targeted neurons / neural regions in brain
Outputs brainwaves with associated rhythms and frequencies
Epilepsy.com
Slide6Epilepsy
EpilepsySynchronous firing of neurons which create high amplitude electrical discharges; this ‘storm’ inhibits other neural signals from getting through and disables function areas of the brainStatisticsEveryone's brain has the ability to produce a seizure under the right conditions1 in 20 will have an epileptic seizure at some time in their lifeTreatment
Once diagnosed with epilepsy, people are generally given anti-epileptic medication. With the appropriate treatment, up to 70% of people could be seizure free.
Characteristics / symptoms
Seizures (40 different types)
‘Aura’, a sensory hallucination, often precludes a seizureEEGRecording of neural activity of targeted neurons / neural regions in brainOutputs brainwaves with associated rhythms and frequencies
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide7Examples of Seizure
MorphologiesYaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide8Complex Network Theory
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide9Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide10Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Prof Paul Gompers
Slide11Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Vagus nerve stimulation (VNS) A lead is attached to the left vagus nerve in the lower part of the neck. It delivers mild electrical stimulations on demand
Deep brain stimulation
targets the thalamus (which relays pain, temperature, and touch sensations to the brain).
Slide12Results of HRV Prediction
HumansRatsSuccessful forecasting
Tachycardia period
success rate
86%
|∆RRI| Vs. RRIforecasting times
1.5-11 min.
Successful forecasting
Bradycardia period
success rate
82%
|∆RRI| Vs. RRI
forecasting times
2.5-9 min.
Slide13Fyodor Dostoyevsky(1821-1881)
Most known epileptic novelistGave vivid accounts of apparent temporal lobe seizures in his novel “The Idiot”Describes an aura he used to get before the onset of a seizureYaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide14Vagus Nerve Stimulation
Longest nerve in the body; sweat, blood pressure, and heart activity (heart rate)Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide15The
Vagus NerveLongest nerve in the body; Originates in the Brainstem Goes all the way to the stomach, passing through essential organs (Vocal cords, heart, lungs, intestines)Also controls sweat, blood pressure, and heart activity (e.g., heart rate)
Yaari & Beck, 202; Lopes da Silva et al., 2003;
Slide16The
Vagus Nerve (cont)Modulates the SYMPATHETIC and PARASYMPATHETIC systemGoes all the way to the stomach, passing through essential organs (Vocal cords, heart, lungs, intestines)Also controls sweat, blood pressure, and heart activity (heart rate)
Yaari & Beck, 202; Lopes da Silva et al., 2003;
Slide17The problem
~30% of epileptics left untreated and victim ofviolent seizuresInjuries resulting from epilepsy is most oftencaused by convulsive seizuresIf a ‘lead-time’ could be provided by a seizuredetection system, physical injury would be greatly reduced and quality of life increasedYaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide18Distinctive Features of Epilepsy
The epileptogenic process is characterized by abnormal synchronous burst discharges in neuronal cell assemblies recordable during and in between seizures (Matsumoto & Ajmone‐Marsan 1964a, Matsumoto & Ajmone Marsan 1964b; Babb et al. 1987). The transition to a seizure is caused by an increasing spatial and temporal non-linear summation of the activity of discharging neurons
(Calvin 1971; Calvin et al. 1973).
Due to the typically unpredictable occurrence of seizures it remains difficult to investigate the rules governing the initiation of seizure activity in humans.
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide19Brain as a Dynamic System
A dynamical system consists of StateDynamicsState – the information necessary at any time instant to describe the future evolution of a systemDynamics – defines how the state evolves over timeYaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide20Attractors and Dimensions
AttractorSet of states towards which the system evolves – Characterizes the long term behavior of the systemDimension of a systemDescribes the amount of information required to specify a point on the attractor - the long term behavior of a systemMore complex behavior – more information is required to describe this behavior – higher dimension of the system
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide21Brain as a Dynamic System
The application of the theory of non-linear dynamics offers information about the dynamics of the neuronal networks. Several authors have shown that EEG/ECoG signals exhibit chaotic behavior (Basar,1990; Frank et al,1990; Pijn et al,1991). The correlation dimension D2 (Grassberger
and Procaccia1983), provides good information about EEG complexity and chaotic behavior.
(Mayer-Kress and Layne (1987) )
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide22Dynamics of Epileptic EEG
The spatio-temporal dynamics of the epileptogenic focus is characterized by temporary transitions from high-to low-dimensional system states (dimension reductions) (Lehnertz & Elger 1995,1997). These dimension reductions allow the lateralization and possibly localization of the epileptogenic focus
(Lehnertz
&
Elger
1995,1997).Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide23Seizure
prediction by non-linear time series analysis of brain electrical activityChristian E. Elger, Klaus Lehnertz (1998)Do prolonged and pronounced transitions from high - to low - dimensional system states characterize a pre-seizure phase?The identification of this phase would enable new diagnostic and therapeutic possibilities in the field of epileptology. Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide24Methods
Electrocorticograms (ECoG) and stereoelectroencephalograms (SEEG) of 16 patients 68 EEG epochs were analyzed. Fifty‐two data sets of state 1; mean duration: 19.5 ± 6.9 min; range: 6–40 min; minimum distance to any seizure: 24 h. 16 data sets of state 2; mean duration before the electrographic seizure onset: 15.1 ± 5.8 min; range: 10–30 min; seizure onset was defined as earliest signs of ictal ECoG/SEEG patterns).
Seizure prediction by non‐linear time series analysis of brain electrical activity Christian E.
Elger
, Klaus
Lehnertz (1998)Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide25Methods
A moving window dimension analysis was applied:Data sets were segmented into half-overlapping digitally low-pass filtered consecutive epochs of 30 s duration.Calculation of the modified correlation integral - the mean probability that the states at two different times are close. Estimate of the correlation dimension D2 for each epoch.
Seizure prediction by non‐linear time series analysis of brain electrical activity Christian E.
Elger
, Klaus Lehnertz (1998)Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide26Calculation of correlation dimension
Digital low-pass filtering (cut-off frequency 40 Hz) Construction of m-dimensional vectors Xm(i) (i = 1, N; m = 1,. . . , 30) from the initial ECoG samples v(i) (
i = 1, N) of a given electrode using the method of delays (
Takens
, 1981):
Seizure prediction by non‐linear time series analysis of brain electrical activity Christian E.
Elger
, Klaus
Lehnertz
(1998)
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide27Correlation Integral
For a stepwise decreasing radius r of a hypersphere centered at each vector Xm(i) for increasing m the correlation integral Cm(r) was calculated as (Grassberger and Procaccia, 1983):
Counts the number of pairs of points with distance less then r.
For small r: C
m
(r) ≈ rD2 D2
= slope of (in a linear region)
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide28Calculation of Correlation Dimension
The correlation dimension D2 is obtained by:D2=slope offor decreasing r in a linear region Alternatively:
If no linear region
is found D
2
= 10
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide29Results
For each selected electrode of the ECoG sets, a time profile of the estimated D2, values was constructed.The seizure (S) exhibits lowest dimension values.
Seizure prediction by non‐linear time series analysis of brain electrical activity Christian E. Elger
, Klaus
Lehnertz
(1998)Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide30Results
For both states maximum dimension reductions were always found inside the epileptogenic focus regardless of spike activity.During state 2, maximum dimension reductions were always observed in time windows immediately preceding seizures. In state 1:Dimension reductions with a mean of 1.0; range 0.5-2.5.Mean duration of 5.25min; range 1.00–10.75 min.In state 2:
Dimension reduction mean 2.0; range: 1.0–3.5.Mean duration 11.50 min; range: 4.25–25.00 min.
Highly significant differences between maximum state 1 and pre-seizure state dimension reductions (
D
r: Z = – 3.41, P = 0.0006;Tr: Z
= – 3.52, P = 0.0004).
Seizure prediction by non‐linear time series analysis of brain electrical activity Christian E.
Elger
, Klaus
Lehnertz
(1998)
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide31Discussion
A reduced dimensionality of brain activity, as soon as it is of sufficient size and duration, precisely defines states which proceed to a seizure. I was demonstrated that the features of the pre-seizure state differ clearly from the one found during seizure.Pronounced dimension reductions of pre-seizure electrical brain activity are restricted to the area of the epileptogenic focus, they can reflect increasing degree of synchronicity of pathologically discharging neurons. Seizure prediction by non‐linear time series analysis of brain electrical activity Christian E.
Elger, Klaus Lehnertz
(1998)
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide32Discussion
Correlation Dimension measure as presented here is subjective.Highly sensitive to noise.Subject specific.Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide33Introduction cont.
the brain-heart axisVagus Nerve
The existence of
pre- ictal phase
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide34Introduction cont.
This study Forecasting seizures Partial complex – humans Generalized - rats
Novel method for HRV analysis
Ph.D. D.H.Kerem
Ph.D. A.B.Geva
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide35Known Methods
Spectral analysis of the time series of R-R intervals non-linear dynamics shortcoming - inability to account for non-stationary states and transients
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide36Known Methods cont.
Time-varying power spectral density estimation Attractors and correlation dimensions
Karhunen-Love transform-based signal analysis method
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide37Fuzzy clustering approach
comet or torpedo-shapedunsupervised method advantageYaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide38Chosen method
EEG-contained information of HRV. (GEVA and KEREM, 1998)an unsupervised method designed to deal with merging and overlapping states
ability to spot and classify
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide39Data resources
HumansRatsHumans
21 patients records, archived records
The recording machinery
simultaneous EEG and video recording
ECG channelvisual inspection by an EEG expert
The actual database
Rats
Hyperbaric-oxygen
ECG and EEG filtering and recording
Rats effects
Time period analyzing
Control rats Vs. research rats
OUTPUT
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide40Method cont.
Choice of analysis parameters|∆RRI| Vs. RRIembedding dimension NFor this experiment –
Both features
N = 3
number of clusters
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide41Method cont.
Forecasting criteria Appearance Disappearance Dominant
False negative - False positive
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide42Results
HumansRatsSuccessful forecasting
Tachycardia period
success rate
86%
|∆RRI| Vs. RRIforecasting times
1.5-11 min.
Successful forecasting
Bradycardia period
success rate
82%
|∆RRI| Vs. RRI
forecasting times
2.5-9 min.
Yaari & Beck, 2002; Lopes da Silva et al., 2003;
Slide43Results cont.
HumansRatsprediction failures
false negative
One case
false positive
Two casesLonger records
prediction failures
false negative
none
false positive
Two cases
Ignoring changes shown in control rats
Yaari & Beck, 2002; Lopes da Silva et al., 2003;