PPT-What can we do about repeats?

Two main approaches Cluster the reads Link the reads What can we do about repeats Two main approaches Cluster the reads Link the reads What can we do about repeats Two main approaches Cluster the reads. In this chapter were going to learn one reason why some systems go to an equilibrium For example the pure coordination game goes to an equilibrium Markets go to equilibrium Other models such as Conways Game of Life do not go to equilibrium They prod brPage 1br Can Can Jacques Offenbach 181980 Allegro brPage 2br 2 1 2 1 brPage 3br 1 4 de novo. repeat detection in genomic sequences. Do Huy Hoang. Outline. Introduction. What is a repeat?. Why studying repeats?. Related . work. SAGRI. Algorithm. Analysis. Evaluation. Introduction. What is a repeat? (Definition). Geobacillus. and . Heamophilious. . Phages. Ramey . Elsarrag. Introduction. Tandem repeats are adjacently repeated patterns of DNA sequences. They are associated with genetic instability and are used for forensic identification. MODALS Can / Can’t Lesson Can / Can’t Can / Can’t Talking aboutability Asking for andgivingpermission Makingrequest Can / Can’t Modalverbscan’t followingcharacteristics Theya . . Session . 3. .1: Repeats. . . Session . 3. .2: Biased regions. Miguel Andrade. Johannes-Gutenberg University of Mainz. A. ndrade. @uni-mainz.de. of. . PROTEIN SEQUENCE. Frequency. 14% proteins contains . Mayo/UIUC Summer . C. ourse in Computational Biology. Session Outline. Genome sequencing. Schematic overview of genome assembly. (a) DNA is collected from the biological sample and sequenced. (b) The output from the sequencer consists of many billions of short, unordered DNA fragments from random positions in the genome. (c) The short fragments are compared with each other to discover how they overlap. (d) The overlap relationships are captured in a large assembly graph shown as nodes representing . Nick Turner. Bio 446 Fall 16. Review. siRNA. dsRNA. microRNA. Immunity. Gene Regulation. Enzymatic breakdown of RNA. RNA Interference. RNAi. The use of RNA to inhibit gene expression.. Guiding RISC (RNA Induced Silencing Complex) cleave and degrade specific segments of RNA. Miguel . Andrade. Faculty of Biology, . Johannes Gutenberg University . Institute of Molecular Biology. Mainz, Germany. a. ndrade@uni-mainz.de. Repeats. Frequency. 14% proteins contains . repeats. . BY: William Gittens +. Sam . J. ackson. What is a Tandem Repeat?. It is a DNA pattern of two or more nucleotides. This pattern is repeated and the repetitions are directly adjacent to each other . Uses . Fall 2015: 197 Incompletes given. Spring 2015: 314 Incompletes given. 153 of these were converted to W. Incomplete Grade Policy. Maryland Institutions. Bowie State . F. after 6 weeks of next term. Coppin State . Do Huy Hoang. Outline. Introduction. What is a repeat?. Why studying repeats?. Related . work. SAGRI. Algorithm. Analysis. Evaluation. Introduction. What is a repeat? (Definition). [General]: Nucleotide sequences occurring multiply within a genome. Chromosome. 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. Simple repeats (micro-satellites). Low complexity repeats. DNA repeat elements (DNA). Long terminal repeat elements (LTR). Unknown. Long interspersed nuclear elements (LINE). TWO TYPES OF FINGERPRINTS ARE KNOWN SO FAR !. Continued . Conventional fingerprint . of an individual comes from . finger tip . and unique for an . individual.. This . is used for identification of a person in forensic lab, police station etc. .