Georeferencing Workshop Lawrence KS 1011 Jan 2013 History 1999 C reation of original FishNet Network Z3950 protocol for sharing data Search via Species Analyst distributed query model ID: 284367
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Slide1
FishNet 2 Collaborative
Georeferencing WorkshopLawrence, KS 10-11, Jan 2013Slide2
History
1999:
Creation of original FishNet Network
Z39.50 protocol for sharing data
Search via Species Analyst (distributed query model)
2005:
FishNet 2 created
Search via DiGIR Portal (distributed query model)
Harvesting of DiGIR,
DwCA
, IPT,
Static Spreadsheets
Search via FishNet 2 Portal (centralized query model)
2010:
FishNet 2 (centralized query model)
Transition to DiGIR Protocol
2012-2016:
Portal &
d
ata
expansion and enhancement
Slide3
Global network of fish collections
4
8 data providers
3.2 million lots
30+ million specimens
57% georeferencedSlide4
Generalizing FishNet 2:
The Biological
Object Search Service
(BOSS)Slide5
Full Text Searches
Common NamesSynonymsInstitutionalTemporalGeographicSlide6
Enabling Spatial QueriesSlide7
Search Results
Occurrence Records
Geographic
Summary
Taxon
Summary
Provider
SummarySlide8
Downloading & Visualizing ResultsSlide9
www.fishnet2.net/api/v1/occurrence/?
api=myapikey&t=percina auroraSearch APICharacteristics“REST” like styleOutput in CSV or Tab API Key to track usageServicesTaxonProviderOccurrenceOccurrence Counts
Allows integration with research workflowsPercina auroraSlide10
> library(
rvertnet)> f1=vertoccurrence(t="Hypophthalmichthys molitrix",
grp="fish")> f2=subset(f1,Latitude !=0 & Longitude != 0)
> world = map_data("world")
> ggplot(world, aes(long, lat)) +
geom_polygon
(
aes
(group = group), fill = "white",color = "gray40", size = .2) +
geom_jitter
(data = f2,
aes(Longitude, Latitude), alpha=0.6, size = 2.5,
color = "red") +
opts(title = "Hypophthalmichthys molitrix (Silver Carp)")
http://github.com/vijaybarve/rvertnet
Interoperability:
RVertNetSlide11
ReportingSlide12
Reporting
DetailsSlide13
b
y the Numbers Number of Records Number of Queries or VisitorsSlide14
Current Project Goals:
To expand the number of records within FishNet to approximately 4 million lots representing over 30 million specimens To georeference all "georeferencable" records lacking geographic coordinatesTo repatriate results to source data providersSlide15
Georeferencing CollaboratorsSlide16
“Preliminary” Assignments
2 out of 4 million records in need of georeferencing~290,000 locality records