Computational Reconstruction of Ancestral DNA Sequences Mathieu Blanchette Abdoulaye Banir Diallo Eric D

Computational Reconstruction of Ancestral DNA Sequences Mathieu Blanchette Abdoulaye Banir Diallo Eric D - Description

Green Webb Miller and David Haussler Summary 1 Introduction 171 From Methods in Molecular Biology Phylogenomics Edited by W J Murphy 57513 Humana Press Inc Totowa NJ brPage 2br 2 Materials 21 Sequence Data 172 Blanchette et al brPage 3br 22 Phylogen ID: 35586 Download Pdf

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Computational Reconstruction of Ancestral DNA Sequences Mathieu Blanchette Abdoulaye Banir Diallo Eric D

Green Webb Miller and David Haussler Summary 1 Introduction 171 From Methods in Molecular Biology Phylogenomics Edited by W J Murphy 57513 Humana Press Inc Totowa NJ brPage 2br 2 Materials 21 Sequence Data 172 Blanchette et al brPage 3br 22 Phylogen

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Computational Reconstruction of Ancestral DNA Sequences Mathieu Blanchette Abdoulaye Banir Diallo Eric D




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Presentation on theme: "Computational Reconstruction of Ancestral DNA Sequences Mathieu Blanchette Abdoulaye Banir Diallo Eric D"— Presentation transcript:


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Computational Reconstruction of Ancestral DNA Sequences Mathieu Blanchette, Abdoulaye Banir Diallo, Eric D. Green, Webb Miller, and David Haussler Summary 1. Introduction 171 From: Methods in Molecular Biology: Phylogenomics Edited by: W. J. Murphy  Humana Press Inc., Totowa, NJ
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2. Materials 2.1. Sequence Data 172 Blanchette et al.
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2.2. Phylogenetic Information 2.3. Sequence Annotation 3. Methods 3.1. Predicting Ancestral Sequences Computational Reconstruction of DNA Sequences 173
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3.1.1. Multiple Sequence

Alignment 3.1.2. Indel Reconstructing 174 Blanchette et al.
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3.1.3. Substitutions Reconstruction 3.1.4. The inferAncestors Program 3.1.5. Genome Rearrangements Computational Reconstruction of DNA Sequences 175
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3.2. Assessing Reconstruction Accuracy Through Simulations 176 Blanchette et al.
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Computational Reconstruction of DNA Sequences 177
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178 Blanchette et al.
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3.3. Reconstruction of Actual Mammalian Sequences Computational Reconstruction of DNA Sequences 179
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4. Notes 180 Blanchette et al.


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181
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Acknowledgments 182 Blanchette et al.
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References Computational Reconstruction of DNA Sequences 183
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184 Blanchette et al.