PPT-Motif finding

Stat2 120m Evalue 51e202 Width 16 Sites 148 200 peaks used Jaspar Stat1 motif Stat1 120 m Jaspar Stat1 motif Evalue 59e319 Width 16 Sites 198 200 peaks used Irf1 120 min value 33e130. What’s a motif paper?. A motif paper allows you to focus on an aspect of a short story, play, or novel. . By exploring a single motif, you are able to draw conclusions and offer insight into the motivation or message of a particular piece of literature.. Simon Andrews. simon.andrews@babraham.ac.uk. @. simon_andrews. v. 1.0. 1. Rationale. 2. Gene A. Gene B. Gene C. Hit A. Hit B. Hit C. Prom A. Prom B. Prom C. GGATCC. GGATCC. GGATCC. Basic Questions. Does the sequence around my hits look unusual?. Zhizhuo. Zhang . Outline. Review of Mixture Model and EM algorithm. Importance Sampling. Re-sampling EM. Extending EM. Integrate Other Features. Result. Review Motif Finding: Mixture modeling. Given a dataset . Radley. . . Entry Task 3/. 13: Today you’ll need your . SpringBoard. , journal, writing utensil, and novel (possibly sticky notes if you have them). . Study of Motifs. The character of Boo . Radley. Three Important Devices: Know These. Symbol: An object that represents something more significant that just itself. Motif: A . recurring. element or idea; a phrase; image; repetition of similar symbols; repetition of an issue/attitude. 3/26/2013. Transcriptional Regulation. Transcription . is controlled by the interaction of . tran. -acting elements called . transcription . factors . (TFs) . and . cis. -acting elements . of DNA. . Prediction . By Cate Kennedy . REVISION . THE COLLECTION AS A WHOLE. Secrets. Things hidden from view. Concealment. Darkness. Communication . Human condition …”there is some hidden grief here I need to declare, and my fingers itch for a pencil..” . Cell Networks. University of Heidelberg. Interactions . and Modules: the how and why of molecular interactions. Proteins are modular. Since the early 1970s it has been observed that protein structures are divided into discrete elements or domains that appear to fold, function and evolve independently. . Cody Dunne and Ben Shneiderman. {cdunne, ben}@. cs.umd.edu. 30. th. . Annual . Human-Computer Interaction Lab Symposium, May 22–23, 2013. College Park, . MD. Who Uses Network Analysis. Network Analysis is Hard. Prof. William Stafford Noble. GENOME 541. Outline. Representing motifs. Motif discovery. Gibbs sampling. MEME. Scanning for motif occurrences. Multiple testing correction redux. Motif (n). : a succession of notes that has some special importance in or is characteristic of a composition. simon.andrews@babraham.ac.uk. @. simon_andrews. v. 1.0. 1. Rationale. 2. Gene A. Gene B. Gene C. Hit A. Hit B. Hit C. Prom A. Prom B. Prom C. GGATCC. GGATCC. GGATCC. Basic Questions. Does the sequence around my hits look unusual?. Prof. William Stafford Noble. Stuff folks liked. Good pace. x3. Powerpoint. was easy to follow. x2. Really appreciate reading the program step by step. x2. Helpful to go over the sample problems at the beginning of class.. Modules using Information Theory. BMI/CS 776 . www.biostat.wisc.edu/bmi776/. Spring . 2018. Anthony Gitter. gitter@biostat.wisc.edu. These slides, excluding third-party material, are licensed under . Motif 4. Motif 4. Motif 5. Motif 6. Supplementary . Figure . S2. . Amino acid sequence alignment of the five members of the Arabidopsis PAR1-family proteins (LAT1-5) shows a number of conserved regions and motifs throughout the protein sequence. Motifs were identified using Multiple .