PPT-Genotype Phasing and Imputation in 1x Sequencing Data

Author : danika-pritchard | Published Date : 2017-05-17

Warren W Kretzschmar DPhil Genomic Medicine and Statistics Wellcome Trust Centre for Human Genetics Oxford UK Supervisor Jonathan Marchini C ommonest psychiatric

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Genotype Phasing and Imputation in 1x Sequencing Data: Transcript

Warren W Kretzschmar DPhil Genomic Medicine and Statistics Wellcome Trust Centre for Human Genetics Oxford UK Supervisor Jonathan Marchini C ommonest psychiatric disorder and the second ranking cause of morbidity world. I.Wasito. . Faculty of Computer Science. University of Indonesia. . F. aculty of Computer Science (Fasilkom), University of indonesia. . at a glance. Initiated . as the . C. enter . of Computer Science (. longitudinal health . records. Irene Petersen and Cathy Welch. Primary Care & Population Health. Today. Issues with missing data and multiple imputation of longitudinal records. Twofold algorithm . María. . García. , Chandra Erdman, and Ben Klemens. Outline. Background on the Survey of Income and Program Participation (SIPP). Methods for missing data imputation. - . Randomized Hot deck. - SRMI . Presenter: . Ka. -Kit Lam. 1. Outline. Big Picture and Motivation. IMPUTE. IMPUTE2. Experiments. Conclusion and Discussion. Supplementary : . GWAS. Estimate on mutation rate . 2. Big Picture and Motivation. with large proportions of missing data. :how much is too much? . Texas A&M HSC . Jin. is designed by . Dr. Huber. Korean Female Colon Cancer. Risk. Factors. Range. Event . Non-event. HR. 95% CI. Jared Decker. Assistant Professor. Beef Genetics Specialist. Computational Genomics. By the July of 2015, costs $0.015 to sequence 1 million base pairs.. September 2001, costs . $. 5,292 to sequence 1 million base pairs.. Aleksandar. R. . Mihajlovic. Technische. . Uni. versität München. mihajlovic@mytum.de. +49 176 673 41387. +381 63 183 0081. 1. Overview . Explain input data based imputation algorithm categorization scheme. Katherine Lee. Murdoch Children’s Research Institute &. University of Melbourne. Missing data in epidemiology & clinical research. Widespread problem, especially in long-term follow-up studies. Zhiwu Zhang. Washington State University. Lecture 7: Impute. Homework2 posted, due Feb 17, Wednesday, 3:10PM. M. idterm exam: February . 26, Friday, 50 minutes (. 3:35-4:25PM), 25 . questions. . F. inal exam: May . Sarah Medland. Boulder 2015. What is imputation? . (. Marchini. & . Howie. 2010). . 3 main reasons for imputation. Meta-analysis. Fine Mapping. Combining data from different . chips. Other less common uses. WHI using reference haplotypes from the 1000 Genomes Project. Presented by Qing Duan. Dr. Yun Li group. UNC at Chapel Hill. 09-13-2012. Outline. Imputation. Study samples: WHI African Americans and Hispanics samples. Boulder 2015. What is imputation? . (. Marchini. & . Howie. 2010). . 3 main reasons for imputation. Meta-analysis. Fine Mapping. Combining data from different . chips. Other less common uses. sporadic missing data imputation . longitudinal health . records. Irene Petersen and Cathy Welch. Primary Care & Population Health. Today. Issues with missing data and multiple imputation of longitudinal records. Twofold algorithm . Markov Models of Haplotype Diversity. Justin Kennedy. Dissertation . Defense for . the Degree of Doctorate in Philosophy. Computer Science & Engineering Department. University of Connecticut. 1. Outline.

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