PPT-Genomes to Fields

2014 Workshop Maize Phenotypic Information Platform Carolyn Lawrence Chicago IL December 10 Phenotype A  phenotype  from Greek  phainein to show   typos type is the composite of an organisms . Very complex shape, requiring 20 gene products for assembly. - . Capsid. (head), contains linear dsDNA genome. - . Tail. , consists of sheath plus internal tube. Bacteriophage T4. Figure 11.2. Phage T4 binds to . Ann . Lesnefsky. (Stanford University). Sarah Douglas (Harvard University). Julian . Damashek. (Stanford University). Bradley . Tolar. (University of Georgia). Hopkins Microbiology Course 2011. Comparative . Andrey Grigoriev. Director, Center for Computational and Integrative Biology. . Rutgers University. 2. What are we going to do?. Observe effects of fundamental processes. Estimate their relative contribution. 2014 Workshop. G . × . E ANALYSIS. Diego . Jarquin. Chicago, IL. December 10. Variance components for common . inbreds. and hybrids. Genomes to Fields . Inbred – Pollen DAP. Inbred – Plant height. Comparative genomics of sponges, sea anemones, and multicellular pancakes. Mansi Srivastava. Rokhsar Lab, Department of Molecular and Cell Biology, UC Berkeley. Reddien Lab, Whitehead Institute for Biomedical Research. George Varghese (MSR, UCSD). ( with V. . Bafna. , C. . Kozanitis. , UCSD). Interpreting the Genome. Technology Review . 2009. New technologies will soon make it possible to sequence thousands of human genomes. Now comes the hard part: understanding all the data.. 6.1 Introduction to Genomics. 6.2 Sequencing Genomes. 6.3 Bioinformatics and Annotating Genomes. 6.1 Introduction to Genomics. Genome. Entire complement of genetic information. Includes genes, regulatory sequences, and noncoding DNA. Dr. Vladimir Teif. BS222 – Genome Science Lecture 1. Welcome to BS222 Genome Science!. Meet your lecturers. Vladimir Teif. (module supervisor). Leonard . Schalkwyk. Patrick . Varga-Weisz. Jordi . Paps. Tutorial. ICHG 2011. Montreal. , Quebec, Canada. October 13, 2011. Intro. International project to construct a foundational data set for human genetics. Discover virtually. all common human variations by investigating many genomes at the base pair level. 3. Tim . Beissinger. (Göttingen). Martin Bohn (UIUC). Ed Buckler (ARS). Darwin Campbell (ISU). Alejandro Castro (UW). Ignacio . Ciampitti. (KSU). Liang Dong (ISU). Jode. Edwards (ARS). David . Ertl. Clicker Questions . by . Tara . Stoulig. Which of these criteria have been used in selecting species whose genomes have been sequenced?. The species should be relevant for human health or well-being.. Bas E. Dutilh. March 4. th. 2013. Protein function. Phenotypic. . function. E.g. . apoptosis. GO: . Biological. . process. Cellular. . function. E.g. . ribosome. GO: . Cellular. component. Molecular. Circularly Permuted Genomes. Some phages have circularly permuted genomes. This means a linear concatamer of phage DNA is synthesized, used to fill a phage head, then cut when the head is full. Generally, one head will fit more than 100% of a genome, say, 103-110%. This ensures that wherever the DNA is cut, at least one working copy of each gene is present.. Skin SSG . May 2018. Catherine Carpenter-Clawson, Programme Manager, WE GMC. Courtesy of Genomics England. From . Genetics . to . Genomics. Genetic testing = single gene. (. s. ). or panels. . Exome sequencing = coding DNA .