BioMart to extract SNP information httpplantsensemblorgbiomartmartview How to use Biomart to find SNP markers wwwwheattrainingcom How to use Biomart to find SNP markers wwwwheattrainingcom ID: 1043328
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1. Step-by-step demo of using BioMart to extract SNP informationhttp://plants.ensembl.org/biomart/martviewHow to use Biomart to find SNP markers www.wheat-training.com
2. How to use Biomart to find SNP markers www.wheat-training.com
3. How to use Biomart to find SNP markers www.wheat-training.com
4. Selects particular data (e.g. chromosomal region)Choose data to output (e.g. marker names)How to use Biomart to find SNP markers www.wheat-training.com
5. How to use Biomart to find SNP markers www.wheat-training.com
6. How to use Biomart to find SNP markers www.wheat-training.com
7. How to use Biomart to find SNP markers www.wheat-training.com
8. How to use Biomart to find SNP markers www.wheat-training.comChoose data to output (e.g. variety/strain the SNP is found in)
9. How to use Biomart to find SNP markers www.wheat-training.com
10. How to use Biomart to find SNP markers www.wheat-training.com
11. How to use Biomart to find SNP markers www.wheat-training.com
12. How to use Biomart to find SNP markers www.wheat-training.com
13. Click “results”How to use Biomart to find SNP markers www.wheat-training.com
14. How to use Biomart to find SNP markers www.wheat-training.com
15. iSelect, Axiom and KASP and HapMap all availableCan see on browser and download on BioMartUse “filters” to select chromosome regions and varieties (called strains on ensembl)Use “attributes” to select types of data you want (i.e. columns)Summary of variation informationHow to use Biomart to find SNP markers www.wheat-training.com
16. How to go from SNP data in Ensembl to getting KASP markers?Use PolyMarker!http://polymarker.tgac.ac.uk/How to use Biomart to find SNP markers www.wheat-training.comFor help see our step by step guide:http://www.wheat-training.com/wp-content/uploads/Genomic_resources/How-to-use-Polymarker.pptx