PPT-October 09 CSE 182 CSE182-

L8 Protein Sequence Analysis Patterns regular expressions Profiles HMM Gene Finding October 09 CSE 182 QUIZ Question your friend likes to gamble He tosses a coin HEADS he gives you a dollar TAILS you give him a dollar. October 2014 October 2014 October 2014 October 2014 Great Powers in the Middle East. Galen Jackson. April 22, 2014. Agenda. Briefly wrap up the Israeli nuclear program. The War of Attrition and . t. he Rogers Plan . The Jordan Crisis. The Road to War. By Ted Hughes. October is marigold, and yet. A glass half full of wine left out. To the dark heaven all night, by dawn. Has dreamed a premonition. Of ice across its eye as if. The ice-age had begun to heave.. Assignment. : . VI-. Topic. : . Natural Selection. Do. : . C. onduct a virtual investigation to determine the changes in populations. . Level. : . Understanding & Analysis. Question. : . What are the different kinds of protective coloration? How does protective coloration help predator & prey?. October is marigold, and yet. A glass half full of wine left out. To the dark heaven all night, by dawn. Has dreamed a premonition. Of ice across its eye as if. The ice-age had begun to heave.. The lawn . Peptide identification. CSE182. General isotope computation. Definition:. Let p. i,a. be the abundance of the isotope with mass i Da above the least mass. Ex: P. 0,C. : abundance of C-12, P. 2,O. : O-18 etc.. 33 These concerts are generously sponsored by Cindy Sargent.Sponsorship of the music director and related programs is provided in part by a generous gift from the Zell Family Foundation.CSO Tuesday s MS applications. Microarray analysis. CSE182. LC-MS Maps. time. m/z. I. Peptide 2. Peptide 1. x x x x. x x x x x x. x x x x. x x x x x x. time. m/z. Peptide 2 elution. A peptide/feature can be labeled with the triple (M,T,I):. HMMs. Gene finding. October 09. October 09. QUIZ!. Question:. . Your . ‘friend’ likes to gamble. . She . tosses a coin: HEADS,. she . gives you a dollar. TAILS, you give . her . a dollar.. Usually,. Dynamic Programming. www.cse.ucsd.edu/classes/. fa09/. cse182. www.cse.ucsd.edu/~vbafna. FA08. CSE182. Notes. Assignment 1 is online, due next Tuesday.. Discussion section is optional. Use it as a resource.. Dictionary Matching. Silly Quiz. Your friend has a hobby of generating random bit strings, and finding patterns in them.. One day she come to you, excited and says: I found the strangest thing in my randomly generated string; a row of of length 30 which was as follows. HMMs. Gene finding. April 16. Regular expressions as Protein sequence motifs. Problem: if there is a mis-match, the sequence is not accepted.. April 25, 2016. A. Fam(B). C-X-[DE]-X{10,12}-C-X-C--[STYLV]. L7. Dicitionary. . matching. Pattern matching. Fa05. CSE 182. Dictionary Matching. Q: Given k words (s. i. has length l. i. ). , . and a database of size n, find all matches to these words in the database string.. HMM ‘fair-coin’ example. October 09. E. F. (H)=0.5. E. L. (H)=0.1. 0.6. 0.6. 0.4. 0.4. 1. H H T T T is the observed sequence. October 09. E. F. (H)=0.5. E. L. (H)=0.1. 0.6. 0.6. 0.4. 0.4. 0. 1. 0.6.