PPT-BLAST and Database Searches

Mohammed Mehdi Rizvi Molecular Lab Techniques 446 Background BLAST is the B asic L ocal A lignment S earch T ool It is an algorithm used for comparing sequences such as amino acid sequences of proteins or the nucleotides of DNA sequences. NJDC Leadership Summit. – October 2011. Randee J. Waldman. Barton Juvenile Defender Clinic. Emory University School of Law. rwaldm2@emory.edu. 404-727-6235. Tobie J. Smith. Legal Aid Society of Birmingham. Guidance in Cross-Gender and . Transgender . Pat Searches . 2. Introductions. Instructor’s name here. Instructor agency or credentials. Insert bullets as needed. 3. Prison Rape Elimination Act (PREA). with ATLAS and CMS. at 7 . TeV. . Prerequisites for New Physics searches. Expectations: Higgs/SUSY/Exotica . New Physics searches @ 7 . TeV. : Summary. LHCC/A101 5. /. 05/2010. Oliver Buchmüller. Mara . Senghi. Soares. On behalf of the CMS Collaboration. (CIEMAT – Madrid). Workshop on Discovery Physics at the LHC. 05-10.12.2010 - South Africa. CMS searches for new physics: outline. Overview on search strategies. Recap : . Pairwise. sequence alignment. Grouping of two sequences to maximize similarity/identity using a scoring system (substitution matrices):. PAM (1,120,250). BLOSUM (80,62,45). Optimal alignment algorithms:. Thermo Fisher / Open Biosystems. Dr. Krishnan K. . Chittur. University of Alabama in Huntsville. Dr. Joseph Ng. University of Alabama in Huntsville. What is BLAST. B.L.A.S.T. stands for . B. asic . L. Guidance in Cross-Gender and . Transgender . Pat Searches . 2. Introductions. Instructor’s name here. Instructor agency or credentials. Insert bullets as needed. 3. Prison Rape Elimination Act (PREA). Explain . the following regarding searches. :. 1. . When . it is permissible to search an . inmate.. 2. . When . it is permissible to conduct an unclothed body . search . of . an Inmate. , to include. . Jundi. Wang. School of Computing. CSC691. 09/08/2013. 2. Overview. 1.Introduction of BLAST . Background of BLAST. Programs in BLAST. Function of BLAST. 2.Application of BLAST. This presentation will help guide you through a process of choosing the most appropriate sources when completing an internet search.. You will use a PDF template to complete the following tasks:. defining your topic and keywords. A Keyword vs Subject SearchesKeyword searches any words you enter anywhere within the database text title notes author etcSubject searches the subject terms assigned by a cataloger or an indexer allow Post-Doctoral Fellow. Ochman. Lab. Global . vs. Local Alignments. Global . . The global approach is useful when you are comparing a small group of sequences, but becomes become computationally expensive as the number of sequence in the comparison increases. . online and offline. Wen-Dar Lin. Bioinformatics core, IPMB. wdlin@gate.sinica.edu.tw. Preface. When we are talking about . sequence similarity. , we usually are talking about . local alignments. .. NCBI BLAST is one of the most famous local alignment programs where almost everyone has ever used it.. Team2. 邱冠儒 黃. 尹. 柔 田. 耕. 豪 蕭. 逸. 嫻 謝朝茂 . 莊閔. 傑. 2014/05/12. 1. BLAST. Basic local alignment search tool. Enable to compare query sequence of amino-acid or protein or DNA to database .