PPT-Fundamentals of Protein Interaction Network Mapping

Authors Jamie Snider Max Kotlyar Punit Saraon Zhong Yao Igor Jurisica and Igor Stagljar Published December 2015 Molecular Systems Biology Presentation Outline Why are ProteinProtein Interactions PPIs Important. IS 403: User Interface Design. Shaun Kane. Today. More on interaction design. Getting started with user testing. Check-in on A6. How is everybody doing?. Problems? Need feedback?. A7. . posted. Interaction design. Abstract. Background. Methods. To improve the mapping of metagenome-derived DNA sequence to homologous protein coding sequences in reference databases, we have developed an algorithm that maps sequence reads to a reference in the amino acid space. . phenome-interactome. network of protein complexes implicated in genetic disorders. Kasper . Lage. , E . Olof. . Karlberg. , . Zenia. M . Størling. , . Páll. Í . Ólason. , Anders G Pedersen, Olga . Interactions. June 18, 2015. Why PPI?. Protein-protein interactions determine outcome of most cellular processes. Proteins which are close homologues often interact in the same way. Protein-protein interactions place evolutionary constraints on protein sequence and structural divergence. N.N. (GI/MR/M) / N.N. (GI/MR/M). Introduction. bbb. Figure. . 1. Nucleic Acid – Protein Interaction . DataBase. . Figure. 2 . SCOP . family. . characteristic. . Figure. . 3 . Classification of protein-DNA interactions. Interactions. June 6, 2017. Why PPI?. Protein-protein interactions determine outcome of most cellular processes. Proteins which are close homologues often interact in the same way. Protein-protein interactions place evolutionary constraints on protein sequence and structural divergence. A Graph Pattern Matching Approach. Yang Cao. 1,2. , Wenfei Fan. 1,2. , . Shuai. Ma. 2. 1. 1. University of Edinburgh. . 2. Beihang University. Virtual Network Mapping (VNM). and its implication in function prediction and complex detection. Hang Phan. Prof. Michael J.E. Sternberg. Division of Molecular Biosciences . Imperial College London. PhD Research Day April 1. st. 2011. LapA. in LPS Assembly. Aarthi Prakash. December 1, 2017. Lipopolysaccharide. Outer membrane of E. Coli. LPS . 6 Fatty Acyl Side Chains with many sugars attached. LPS bind together. Provides gel like barrier. From a holistic perspective this handbook explores the design development and production of smart textiles and textile electronics breaking with the traditional silo-structure of smart textile research and development. Leading experts from different domains including textile production electrical engineering interaction design and human-computer interaction (HCI) address production processes in their entirety by exploring important concepts and topics like textile manufacturing sensor and actuator development for textiles the integration of electronics into textiles and the interaction with textiles. In addition different application scenarios where smart textiles play a key role are presented too. Smart Textiles would be an ideal resource for researchers designers and academics who are interested in understanding the overall process in creating viable smart textiles. . Arzucan . Özgür. Bilgisayar. . Mühendisliği. . Bölümü. Boğaziçi. . Üniversitesi. Karmaşık Sistemler ve Veri Bilimi . Çalıştayı. . 04.05.2019. arzucan.ozgur@boun.edu.tr. General Research Areas. . in . cancer. . research. Borbála Kovács MD., PhD . student. Supervisor. : Prof. Peter Csermely. About. . cancer. Cancer therapeutics currently have . the lowest clinical trial success rate of all major diseases. . Protein Interaction Networks. - Detect PPIs by experimental methods. - Detect (predict) PPIs by computational methods. - Derive condition-specific PPIs by data integration. Tue, April 24, . 2018. 2. Different Roles of Protein Complexes. rd. ed . Overview and . Figures. Alan Dix. Full reference:. Dix (2012). Network-Based Interaction. Chapter 11 in J. Jacko (Ed.), The Human-Computer Interaction Handbook (3rd Edition). CRC Press. pp.237-272.