PPT-Hidden Markov Models (HMMs)

Steven Salzberg CMSC 828H Univ of Maryland Fall 2010 2 What are HMMs used for Real time continuous speech recognition HMMs are the basis for all the leading products Eukaryotic and prokaryotic gene finding HMMs are the basis of GENSCAN Genie VEIL GlimmerHMM TwinScan etc. Shabana. . Kazi. Mark Stamp. HMMs for Piracy Detection. 1. Intro. Here, we apply metamorphic analysis to software piracy detection. Very similar to techniques used in malware detection. But, problem is completely different . (1). Brief . review of discrete time finite Markov . Chain. Hidden Markov . Model. Examples of HMM in Bioinformatics. Estimations. Basic Local Alignment Search Tool (BLAST). The strategy. Important parameters. Corpora and Statistical Methods. Lecture 8. Markov and Hidden Markov Models: Conceptual Introduction. Part . 2. In this lecture. We focus on (Hidden) Markov Models. conceptual intro to Markov Models. 1. 2. K. …. 1. 2. K. …. 1. 2. K. …. …. …. …. 1. 2. K. …. x. 1. x. 2. x. 3. x. K. 2. 1. K. 2. Example: The Dishonest Casino. A casino has two dice:. Fair die. P(1) = P(2) = P(3) = P(5) = P(6) = 1/6. Steven Salzberg. CMSC 828H, Univ. of Maryland . Fall 2010. 2. What are HMMs used for?. Real time continuous speech recognition (HMMs are the basis for all the leading products). Eukaryotic and prokaryotic gene finding (HMMs are the basis of GENSCAN, Genie, VEIL, GlimmerHMM, TwinScan, etc.). February 2011. Includes material from:. Dirk . Husmeier. , . Heng. Li. Hidden Markov models in Computational Biology. Overview. First part:. Mathematical context: Bayesian Networks. Markov models. Hidden Markov models. First – a . Markov Model. State. . : . sunny cloudy rainy sunny ? . A Markov Model . is a chain-structured process . where . future . states . depend . only . on . the present . state, . Using PFAM database’s profile HMMs in MATLAB Bioinformatics Toolkit. Presentation by: . Athina. . Ropodi. University of Athens- Information Technology in Medicine and Biology . outline. Introduction. February 10, 2010. Hidden Markov models in Computational Biology. Overview. First part:. Mathematical context: Bayesian Networks. Markov models. Hidden Markov models. Second part:. Worked example: the occasionally crooked casino. notes for. CSCI-GA.2590. Prof. Grishman. Markov Model . In principle each decision could depend on all the decisions which came before (the tags on all preceding words in the sentence). But we’ll make life simple by assuming that the decision depends on only the immediately preceding decision. Sushmita Roy. sroy@biostat.wisc.edu. Computational Network Biology. Biostatistics & Medical Informatics 826. Computer Sciences 838. https://compnetbiocourse.discovery.wisc.edu. Oct 25. th. 2016. Mark Stamp. 1. HMM. Hidden Markov Models. What is a hidden Markov model (HMM)?. A machine learning technique. A discrete hill climb technique. Where are . HMMs. used?. Speech recognition. Malware detection, IDS, etc., etc.. Hidden Markov Models IP notice: slides from Dan Jurafsky Outline Markov Chains Hidden Markov Models Three Algorithms for HMMs The Forward Algorithm The Viterbi Algorithm The Baum-Welch (EM Algorithm) Jurafsky. Outline. Markov Chains. Hidden Markov Models. Three Algorithms for HMMs. The Forward Algorithm. The . Viterbi. Algorithm. The Baum-Welch (EM Algorithm). Applications:. The Ice Cream Task. Part of Speech Tagging.