PMC Tagging Guidelines - PowerPoint Presentation

PMC Tagging Guidelines
PMC Tagging Guidelines

PMC Tagging Guidelines - Description


A case study in normalization Abigail Elbow Breena Krick Laura Kelly NIHNLMNCBIPMC JATSCon 9272011 PMC Overview What do those people do with data anyway But first The PMC process ID: 418856 Download Presentation

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Slide1

PMC Tagging Guidelines

A case study in normalization

Abigail Elbow, Breena Krick, Laura

Kelly

NIH/NLM/NCBI/PMC

JATS-Con

| 9.27.2011Slide2

PMC Overview

What do those people do with data, anyway?

But first…Slide3

The PMC process:35 schemas

Validate against declared DTDTransform into JATS XML (Green Archiving DTD)Check validityRun Style Checker

Load to PMC databaseSlide4

What’s that look like?Slide5

Q: Why have a style checker?

A: PMC is simply a user of the JATS / NLM DTDsSlide6

Can you be more specific?

More than one way to tag a structureNeed for normalizationStart with the basic & most inconsistently-tagged:

Article metadata

Figures

Tables

RelaxNG

schema used first

Replaced with XSL

stylesheets

Allow flexibility, reporting, and varying file outputSlide7

Q: So how does anyone know how to tag in PMC style?

A: The PMC Tagging Guidelines…Slide8

The Tagging GuidelinesHTML prose form of the style rules

General Tagging Practice, Document Objects, ElementsIntroduction and Update HistoryXML backbone

Covers PMC, NIHMS, and Bookshelf

Covers both 2.3 and 3.0Slide9

Tagging Guideline XML: @versionSlide10

Tagging Guideline HTMLSlide11

Tagging Guidelines: an elementSlide12

Q: How do I know if my file is compliant?

A: The PMC Style Checker Slide13

Five common style errorsMathML

<

related-article>

tagging

<

xref

>

and @

ref-type

DOIs

Empty

elements

Demo time:

http://

www.pubmedcentral.nih.gov/utils/style_checker/stylechecker.cgi

Slide14

Q: What if I have lots of files?

A: NLM Style Checker stylesheets

(v4.3.4)Slide15

The Style Checker Stylesheets

Main file: nlm-stylechecker.xslIt

xsl:include

(s):

stylecheck-match-templates.xsl

stylecheck-named-tests.xsl

stylecheck-helper-templates.xsl

Reports:

style-reporter.xsl

Generates an HTML Error/Warning reportSlide16

badstyle.XMLSlide17

Another report view: (PMC Production)Slide18

Special thanksLaura Kelly

Breena KrickJeff BeckSlide19

Resources:

PMC Tagging Guidelines:http://www.ncbi.nlm.nih.gov/pmc/pmcdoc/tagging-guidelines/article/style.html

PMC

Online Style Checker:

http://

www.pubmedcentral.nih.gov/utils/style_checker/stylechecker.cgi

Downloadable Style Checker

stylesheets

and instructions:

http://

www.ncbi.nlm.nih.gov/pmc/pmcdoc/tagging-guidelines/stylechecker/stylecheck-README.html

PMC Utilities:

http://www.ncbi.nlm.nih.gov/pmc/pub/validation/

Tagging

Guidelines email list:

http://www.ncbi.nlm.nih.gov/mailman/listinfo/pmc-tagging-guidelines

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