PPT-Previous Lecture: Sequence Database Searching

Introduction to Biostatistics and Bioinformatics Distributions This Lecture By Judy Zhong Assistant Professor Division of Biostatistics Department of Population Health Judyzhongnyumcorg Introduction. Sequence Alignment . Concepts. Introduction to Biostatistics and Bioinformatics. Sequence . Database Searching. This Lecture. Stuart M. Brown, Ph.D.. Center for Health Informatics and Bioinformatics. CAB Abstracts. Introductory demonstration. Today’s schedule. 11:00 - 12:15 . CAB Direct platform (Basic and Advanced). 12:15 – 12.35 . Refreshments break . 12.35 – 13.00. eBooks. 13.00 – 14.00. Tour of the major . molecular biology databases. A database is an . indexed. . collection. of information. There is a tremendous amount of information about biomolecules in publicly available databases. . Information. Database. A database is a collection of data arranged for ease and speed of search and retrieval (The American Heritage Dictionary of English Language, 2000). . The . quality of being "... arranged for ease and speed of search and retrieval" is what distinguishes a database from a computer network.. We refer to a “database” when researching topics. . By “database” we are referring to an “Online Subscription Database.”. A database is a place on the internet where you can search for information.. CABI . product . t. raining. Tom . Corser. Leisure Tourism Database. Agenda. Product overview (content, vital statistics etc.). Live product demo including. Interface navigation. Search functionality. What is a databaseA databaseis defined as a place where information is collected stored and organized This information can also be viewed managed and updated oExamples of DatabasesaProQuestaEBSCOAcce (1979) –. Bio-. biology,Informatique. -Data processing. Study of information content and flow in a biological system with the help of IT.. Multidisciplinary branch. Historical background:. 1961-identified mRNA- . 1. Data structure: Lookup Table. Application: BLAST . 2. The Look-up Table Data Structure. A . k-mer . is a string of length . k.. A . lookup table. is a table of size . |. Σ. |. k. . that stores the location of all . Concepts. Introduction to Biostatistics and Bioinformatics. Sequence . Database Searching. This Lecture. Stuart M. Brown, Ph.D.. Center for Health Informatics and Bioinformatics. NYU School of Medicine. Sequence Searching and Alignments. External Services. Sequence searching and alignments - Andrew . Cowley. 08/05/2012. 2. Andrew Cowley. Bioinformatics Trainer. Hamish McWilliam. Software engineer. Rodrigo Lopez. Niroula. Department of Experimental Medical Science. Lund University. 2015-12-10. 1. Sequence search. Sequences. Nucleotide and amino acid sequences. Known sequences are stored in different databases. Tom Osborne, . L. ibrarian. Literature Searching. Plan of Session. Introduction . to the Library. OpenAthens. registration. Formulating a search. Developing a search . strategy. Searching the databases. , . B.Sc. Biotech Teaching Assistant. Omdurman Islamic University. Bioinformatics Topics. Informatics. Biology. Operating Systems. Windows. , . Macintosh . both offer an intuitive . GUI . … familiarity .