PDF-ADAM: Genomics Formats and Processing Patternsfor Cloud Scale Computin

Matt MassieFrank NothaftChristopher HartlChristos KozanitisAndr. Chapter7.. MapReduce. Types and Formats. NamSoo. Kim. 1. MapReduce. Types. Map & Reduce function types are as follows. :. The . map input key and value types (. K1 . and . V1. ) are different from the . Chang . Liu. Three great tastes that go great together. Combining . PL. ,. . Crypto, . Architecture . Research. With Michael Hicks, Elaine Shi,. Austin Harris, Martin Maas, and Mohit Tiwari. Cloud computing raises . NHGRI strategic plan. What does the NIH think genomics should be for the next 10 years?. [Nature, Feb. 2011]. The Essence of Genomics. (according to NHGRI). Comprehensiveness. . Genomics . aims to generate complete data sets. Although relatively easy to define and measure for a genome sequence, attaining comprehensiveness can be more challenging for other targets (for example, functional genomic elements or the ‘proteome’). SpatialHadoop. Type: Research Paper (Experimental evaluation). Authors: Ahmed . Eldawy. , . Louai. . Alarabi. , Mohamed F. . Mokbel. Presented by: Siddhant Kulkarni. Term: Fall 2015. Motivation. NGS analysis. Ravi Madduri. madduri@anl.gov. Joint work with Paul . Davé. , Lukasz . Lacinski. , Alex Rodriguez, . Dinanath. . Sulakhe. , Ryan Chard and Ian Foster. Globus Genomics is developed, operated, and supported by researchers, developers, and . Cristiano Lopes, ESA. CEOS WGISS-40. 30/09/2015. Overview – Cloud Computing Uses. Cloud . computing and . Earth . Observation:. Processing,. Archiving,. Distribution,. Discovery…. Cloud computing uses in ESA EO Ground-Segment. Presentation to the Manchester Data Science club. 14 July 2016. Peter Smyth. UK Data Service. The challenges of building and populating a secure but accessible big data environment for researchers in the Social Sciences and related disciplines.. Welcome!. Instructor: . Ruoming. Jin. Office: 264 MCS Building. Email: . jin AT cs.kent.edu. Office hour: . Mondays (. 4:30PM to 5:30PM) or by appointment. TA: . Xinyu. Chang. Email: . xchang. AT . Wenting . Wang. Le Xu. Indranil Gupta. Department of Computer Science, University of Illinois, Urbana Champaign . 1. Scale up VS. Scale out. A dilemma for cloud application users: scale up or scale out? . Hosseininaveh. Table of Contents . Introduction . Typical and advance Point cloud Processing operations. PCL programming. How to install PCL and how to use the codes. Data Storage Formats . Segmentation. from NHGRI’s . Planning . Workshop on the Future Opportunities . for . Genome Sequencing . & Beyond. Mark Gerstein & Rick Myers. Recommendations related to genome function. . Part 1: Workshop summary (Mark). Operator State Management. with . Raul Castro Fernandez*. Matteo. . Migliavacca. +. and Peter . Pietzuch. *. *. Imperial College London, . +. Kent . Univerisity. Big data … . … in numbers: . 2.5 billions on gigabytes of data every day . Resource Management II. Eva . Kalyvianaki. ek264@cam.ac.uk. Contents. Apollo: Scalable and Coordinated Scheduling . for Cloud-Scale Computing, . by Eric Boutin, . Jaliya. Ekanayake, Wei Lin, Bing Shi, and . Ravi Madduri. madduri@anl.gov. Joint work with Paul . Davé. , Lukasz . Lacinski. , Alex Rodriguez, . Dinanath. . Sulakhe. , Ryan Chard and Ian Foster. Globus Genomics is developed, operated, and supported by researchers, developers, and .