PPT-Evolutionary model for the statistical divergence of paralogous and orthologous gene pairs
Author : tatyana-admore | Published Date : 2018-02-26
Yue Zhang Chunfang Zheng David Sankoff Presented by Suzy Sun Seeks to infer the nature and timing of evolutionary events by examining the distribution of similarities
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Evolutionary model for the statistical divergence of paralogous and orthologous gene pairs: Transcript
Yue Zhang Chunfang Zheng David Sankoff Presented by Suzy Sun Seeks to infer the nature and timing of evolutionary events by examining the distribution of similarities between orthologous and paralogous gene pairs . Roger . Butlin. University of Sheffield. Maroja. et al. 2009 Evolution. 10 loci – do they all behave in the same way?. Accessory gland proteins with other evidence of selection. We need a flexible method to fit complex demographic (and adaptive?) models with a variety of marker types…. Arabidopsis thaliana. Mauli. Prasad. Primary Advisor: . Dr.Qunfeng. . Dong. Secondary Advisor : . Dr.Haixu. . Tang . School of Informatics, Indiana University, Bloomington.. Protein Expression. © 2002 by Bruce . Algorithmic Computational Genomics. Tandy Warnow. Departments of Bioengineering and Computer Science. http://. tandy.cs.illinois.edu. Course Details. Office hours: Mondays 10-11:45 in 3235 Siebel. Course webpage: . Phylogeography. : trends and perspective. Fang DU. dufang325@gmail.com. Beijing Forestry University. Outline. . Concept & Development. . The main scientific questions. To . infer. the demographic history of important species. k. -partite graphs. Sarah . Gester. , . Ermir. . Qeli. , Christian H. Ahrens, and Peter . Buhlmann. Problem Description. Given peptides and scores/probabilities, infer the set of proteins present in the sample.. Roger . Butlin. University of Sheffield. Maroja. et al. 2009 Evolution. 10 loci – do they all behave in the same way?. Accessory gland proteins with other evidence of selection. We need a flexible method to fit complex demographic (and adaptive?) models with a variety of marker types…. A) genetic barriers such as polyploidy. B) morphologically distinguishable . taxa. C) minimal gene flow across . taxa. D) ecological differentiation. E) cryptic species. 2) Speciation requires. A) divergence. Data. Lijing Wang. 1. , . Yangzhong. . Tang. 2. , . Stevan. . Djakovic. 2. , . Julie . Rice. 2. , . Tony . Wu. 2. , . Daniel J. . Anderson. 2. , . Yuan . Yao. 3. DahShu. Data Science Symposium: Computational Precision Health . Session 1, day 1, Zhang. Outline. Logistic Regression. ROC curve and . AUC (area . under curve). Linear Regression. Kaplan-Meier plot and log-rank test. Cox Proportional odds model. Logistic . Model. Ariadna Pedraza Mensa. Genomics, 2017 . Master’s Degree in Advanced Genetics - UAB. Origin of new genes. DNA-based gene duplication (segmental duplications). Ohno’s model for duplications fate. RNA-based gene duplication (. Mechanisms of concerted evolution. Unequal cross-over. Gene conversion: non-reciprocal transfer of information between homologous sequences; the main mechanism invoked to explain concerted evolution. Eunice Kennedy Shriver. National Institute of Child Health and Human Development (NICHD) and The National Human Genome Research Institute (NHGRI) grant U19 HD077632.. References. Berg . JS, Foreman AKM, O'Daniel JM, Booker JK, . . Nicholas Abel. nabel@bcm.edu. Evolutionary Trace (ET): Uses evolution to quantify importance of a sequence position. (. Tataru. et al 2017, Castellano et al, 2019; Sanchez-Garcia, 2017; . Katsonis. Terminology. phylogeny . evolutionary history of a species or group of species. systematics. . classifying and determining evolutionary relationships of organisms . taxonomy . classifying and naming of organisms.
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