PPT-Working with FreeSurfer

RegionsofInterest ROIs freesurfernet 1 Outline Subcortical Segmentation Cortical Parcellation WM Segmentation PreparationAnalysis of Stats 2 FreeSurfer ROI Terminology ROI Region Of Interest . Ive been working on the railroad just to pass the time aw ay Cant you hear the w istle blow ing rise up so early in the morn Cant you hear the captain shoutin g Dinah blow your horn Dinah w nt you blow Dinah w nt you blow Dinah wont you blow yo ur Cortical Quality . Check. . Lianne. . Schmaal. – ENIGMA MDD. Remarks from sites:. Difficult to . judge whether the quality of the. cortical . parcellations. are . ok. Exclusion of bad regions becomes arbitrary. Martin Styner. UNC - Departments of Computer Science and Psychiatry. NIRAL, UNC IDDRC. Guido . Gerig. , . Ipek. . Oguz. , Josh Cates, . Clement . Vachet. , Cedric Mathieu, Marc . Niethammer. Motivation Neuroimaging. Problems that the urban factory worker faced. Piecework. - pay based on how much you produce. 10-12 hour work day. Poor air/ventilation/poor lighting. Low wages/competition from labor surplus. Capitalist/anti-worker sentiment in early US history. What Working Dog is this?. 1. Standard Schnauzer. 2. Black Russian Terrier. 3. . Briard. Name this Breed. 1. Cane . Corso. 2. . Neopolitan. Mastiff. 3. Tibetan Mastiff. What Working Dog is this?. Overview. , . Limitations. , . pitfalls, etc. . etc.. Neuroimaging. Neuroimaging includes the use of various techniques to either directly or indirectly image the structure or function of the brain.. . FreeSurfer Users. What is Unix/Linux?. An operating system (like Windows and OS X) . Linux is the free, modifiable, and redistributable version of Unix . Why use it?. What is Unix/Linux?. An operating system (like Windows and OS X) . Introduction . to . Unix for . FreeSurfer Users. Navigating directories. Listing directory contents. Creating new directories and text files. Copying and moving . files. Setting . up environment variables specific to FreeSurfer. No forest should be permitted to be worked without the Govt. having approved the management plan. . . Check. . Lianne. . Schmaal. – ENIGMA MDD. Remarks from sites:. Difficult to . judge whether the quality of the. cortical . parcellations. are . ok. Exclusion of bad regions becomes arbitrary. Langston, PSY 4040. Cognitive Psychology. Notes 4. What do these have in common?. You can still remember details of your tenth birthday party (which you don. ’. t need), but you have trouble remembering a definition long enough to write it down.. . 1. What can we do with . FreeSurfer. ?. measure volume of cortical or subcortical structures. compute thickness (locally) of the cortical sheet. study differences of populations (diseased, control). Outline. Motivation. GLM: General Linear Model. Theory. Hypothesis. GLM with . FreeSurfer. Modeling. Command-line Stream. Motivation. Model patterns of interactions and associations between groups. Case Management Best Practice Guidance. Public Law Working Group. What’s new?. Short form orders after completion of full CMO at first hearing. Case summaries & position statements to be filed and served 4pm the day before the hearing.