Finland Hanna Koivula EijaLeena Laiho Esko Piirainen amp Lauri Savolainen 20131213 16122013 Hanna Koivula ITteam 1 Portal Data Warehouse APIs Aplication programing interfases ID: 794959
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Transboundary Access to Biodiversity Data~(Finland )
Hanna Koivula, Eija-Leena Laiho, Esko Piirainen & Lauri Savolainen2013-12-13
16.12.2013
Hanna Koivula/ IT-team
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Slide2PortalData WarehouseAPIs (Aplication programing interfases)Data Visualizing ToolsTools for Reporting Observations
Content and public out reach16.12.20132Henkilön nimi / Esityksen nimi / Tieteenala
Content of this presentation
Progress with:
Slide3We have helped to develop the portal to fully support several languages (en,sv,fi,ee) for both static and dynamical
content.Static = user interface textsDynamic = species descriptions (SPM)All static texts have been translated into Finnish.Finnish taxonomy trees have been created based on the Swedish taxonomy (pre implementation of EE taxonomy module).
All Finnish vernacular names have been loaded from FMNH taxonomy database.Maintenance tasks:
refactoring of the codecorrected bugs and mistakes
improved security
implemented support for running test installations of the portal
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PORTAL:
Naturforskaren
/
Looduseuurija
/
Lajisto
/ The Naturalist
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Data provider(s)
My Data
User interface
file upload
FinBIF
External
Databases
Other data sources
archival
validation
XML
Archive
Version management
Web Services
Long term archival
DATA WAREHOUSE
Secondary (copied) data
P
rocessing
Locations
Taxon names
Persons
Master-data
Data infrastructure @
Luomus
-
FinBIF
GBIF and other networks
OLAP
=
Online
Analytical
Processing
Excel etc.
Portals:
Queries and browsing
Data users
Feedback
for Quality Control
XML-data
(RDF, ABCD,
FMNH2008)
Slide5Currently contains 28 million records:Gbif.se: ~ 15 million (might contain duplicates)Artportalen.se: ~ 5 million Finland: ~ 11 million (various sources)
Artsobservasjoner.no: ~ 250kPluto-F: ~ 200khttp://ws.luomus.fi/lajitietokeskus/datasources?locale=en Real-time data transfer protocol 1 minute to 24 hours update frequency
Protocol has been designed and specifiedProtocol has been implemented by:
GBIF.SEPluto-F
Finnish Game and Fisheries Research Institute
More implementations planned, for example
The Finnish Environment Institute SYKE
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Data Warehouse
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List query
List observations filtered by species, time, area, data source, collection, time of year, record basis or one or more document IDs
http://ws.luomus.fi/lajitietokeskus/search?target=Sciurus+vulgaris&time_yyyy=2013&locale=en
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2 X
Aplication
Programming
Interfase
(API)
implemented for using the warehouse data
Slide72. Aggregated query Limits observations using the same filters as list query, but show summary results aggregated by one of:CoordinatesCollectionTaxon class
DecadeData sourceExample:http://ws.luomus.fi/lajitietokeskus/search?getAllSearch=true&locale=enAggregated by collections, taxons, decades or types:<using above link, go to "Statistics", and select one of the stat types>
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2 X APIs
implemented for using the warehouse data
Slide8Two kinds of maps which can be used in any application, individual observations and aggregated map.1. Example, individual observations: (notice the time slider)http://ws.luomus.fi/Balticdiversity/map?target=liejutaskurapu&time=2000/20132. Example, aggregated map:http://ws.luomus.fi/Balticdiversity/aggregated-map
16.12.20138Henkilön nimi / Esityksen nimi / TieteenalaVisualizing
observation and specimen data
Slide9LöydösWe have developed a new form system (Löydös) that has support for four languages (fi,sv,en,ee)
Does not require registrationCan be used to create various forms, so far:Open nature observation form http://ws.luomus.fi/loydos/forms/luontohavainto?language=enRing recovery form http://ws.luomus.fi/loydos/forms/rengasloyto?language=enInvasive species form http://ws.luomus.fi/loydos/forms/vieraslaji?language=en
Spring monitoring http://ws.luomus.fi/loydos/forms/kevatseuranta?digest=&language=sv
Observations are synced to the Data Warehouse
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Tools for reporting observations
Slide10Hatikka.fi / Fieldjournal.orgExisting system, continued developmentRequires registrationFor dedicated hobbyists
No taxonomical, geographical or temporal restrictionsEnables description of observing events before listing species & and other single observationsDocumentation of single observations with pictures or sound files possibleUsed for specific surveys and monitoring schemesWinter bird censusNational Butterfly Monitoring Scheme
Observations are synced to the Data Warehouse
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Tools for reporting observations
Slide11Map widgetGeneral use map tool that can be used to pick locations or draw polygons, lines, etc.Customized for national needsIn use by Löydös and several other applications
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Tools for reporting observations
Slide12Content from scientific associations, UH & LuomusPinkka, E-learning environment (UH)http://pinkka.helsinki.fi/virtuaalikasvio/ Dragonflies (not yet successful)
Check-lists (red-listed species from SYKE)Vernacular names (various sources)2 outreach events during 2013March 2013 the project was promoted at Luomus eventFascination of Plants theme day - 18.5.2013 ”FinBIF – kansalliset aineistopalvelut” -seminar 11.12.2013
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Content and outreach