PPT-Use G-OnRamp to set up a collaborative annotation environment on Apollo

Yating Liu July 2018 GOnRamp workshop Three types of user accounts on Apollo General process of configuring the Apollo environment Galaxy tools to interface with Apollo Requirements Have an instructor or admin account on Apollo. Denovo genome Denovo genome outline outline novogenome from contigs from assembled contigs annotation Denovo genome Denovo genome Reads contig Gene Gene Annotation Gene Annotation Forgene CALIFORNIA. User name: . acf. -guest. Password: Illinois123. Please use Chrome. Teaching materials for today:. https://. uofi.box.com. /. webapollo. An introduction to Web Apollo.. Manual Annotation Workshop at UIUC. A webinar for the i5K Pilot Species Projects . Monica Munoz-Torres, PhD. Biocurator & Bioinformatics Analyst | @monimunozto. Genomics Division, Lawrence Berkeley National Laboratory. 04 February, 2014. Massimo Poesio. University of . Essex. Part 1: Intro, . Microtask. . crowdsourcing. ANNOTATED CORPORA: . AN ERA OF PLENTY?. With the release of the . OntoNotes. and ANC corpora for English and a number of corpora for other languages (Prague Dependency Treebank especially) we may think we won’t need to do any more annotation for a while . A Close Reading Strategy for Better Comprehension. Text Annotation by Teachers. What is Text Annotation?. While reading, students mark the pages for . Important information. Text meaning or key details. Abstract. A large number of organizations today generate and share textual descriptions of their products, services, and actions. Such collections of textual data contain significant amount of structured information, which remains buried in the unstructured text. While information extraction algorithms facilitate the extraction of structured relations, they are often expensive and inaccurate, especially when operating on top of text that does not contain any instances of the targeted structured information. . Philip . McParlane. , Yashar Moshfeghi and Joemon M. Jose. University of Glasgow, UK. http://www.dcs.gla.ac.uk/~philip/. p.mcparlane.1@research.gla.ac.uk. Motivation for annotating images. Problems with existing automatic image annotation collections. Thesis Proposal. Tao Huang. taohuang@cs.indiana.edu. Outline. Introduction. Motivation. Related System Survey. Research Issues. Milestones. Contributions. Introduction. Annotation Definitions. A commentary on an object that: (Cousins et al. 2000). Authors: Joe Futrelle, Amber York. . @ Woods Hole Oceanographic Institution. Imaging FlowCytobot. (Heidi Sosik et al). HabCam. (Scott . Gallager. et al). SeaBED. (. Hanumat. Singh et al). Phytoplankton . Text Annotation by Teachers. What is Text Annotation?. While reading, students mark the pages for . Important information. Text meaning or key details. Ideas and questions. What About Highlighters?. From Galaxy to Genome Annotation. Jeremy . Goecks. and Luke Sargent . G-OnRamp . Motivations . GEP has shown great success but there . are several challenges. :. Limited to the analysis of different Drosophila species. The Next Generation. Rashmi. Prasad, Bonnie . W. ebber, . A. lan Lee. *. Aravind. Joshi. Outline. Introduction. Discourse Coherence and its annotation. PDTB Basics. PDTB enrichment. Motivation. New relations. Daniel Standage. Biology Department. Indiana University. An-no-ta-. tion. . \ˌa. -. nə. -ˈ. tā-. shən. \. A critical or explanatory note or body of notes added to a text. The act of annotating. Apollo and Daphne, 2. nd. cent. AD, mosaic, from the House of . Dionysos. in . Paphos. , Cyprus. Piero del Pollaiuolo, . about 1441 - before 1496. Apollo and Daphne. , 1470-1480, oil on wood, 29.5 x 20 cm, The National Gallery, London.