PPT-The Materials Genome

Initiative Launch interagency effort amp funding DOE DOD NSF NIST Double the speed to discover develop and manufacture Provide wealth of information to develop new products and processes. Grand Challenges Summit. CATALYSTS. Breakout Chairs. : . . Mark . Barteau (U. . Michigan). . Cathy . Tway . (The Dow Chemical Company). Breakout Speakers. :. Plenary #1: Laura . Gagliardi. (U. Minnesota). Shai. Carmi. Pe’er. lab, Columbia University. and. The Ashkenazi Genome Consortium (TAGC). Boston. September 2013. Outline. Ashkenazi Jewish (AJ) Genetics . and TAGC. Basic Variant Statistics. Utility in AJ Medical . 2. Some genomics history. 1995: first bacterial genome, . Haemophilus influenza. , 1.8 Mbp, sequenced at TIGR. first use of whole-genome shotgun for a bacterium. Fleischmann et al. 1995 became most-cited paper of the year (>3000 citations). GEP Alumni Consortium. NSF Improving Undergraduate STEM Education Grants. Effective Implementation of a Classroom Undergraduate Research Experience (CURE): Testing, Optimizing, and Extending a Bioinformatics Approach. Timetable for today. Time. Activity. 00:00. Introduction to the session. 00:10. Story cards . 00:20. Info cards. 00:30. Issue cards. 00:40. Discuss two key. issues. 00:45. Feedback your issues. What is DNA?. Nikos. . Kyrpides. Genome . Biology . Program (GBP). DOE Joint Genome institute. IMG. Genes. Genomes. Functions. Metadata. Clusters. SNPs. Proteomics. Regulons. Transcriptomes. IMG Systems Data Types. Genome: the total number of genes in an individual.. Human Genome- approx. 20,000 genes on the 46 human chromosomes.. Human Genome Project (HGP). Ongoing effort to completely map and sequence our genome.. Risheng. Chen et al. 2017. BMC Genomics. Oryza. sativa . Cultivated rice. Oryza. sativa . Family . Poaceae. : . grasses, corn, bamboo, wheat….. SR86. New rice cultivar domesticated from a wild strain of rice first found in 1986.. Key considerations:. Genes . Chromosomes. C value paradox. Gene regulation. Epigenetics. Transposable elements. DNA . ……..……..mRNA……….…….Protein . Plant . Estimated # genes. Arabidposis. Key considerations:. Genes . Chromosomes. C value paradox. Gene regulation. Epigenetics. Transposable elements. DNA . ……..……..mRNA……….…….Protein . Plant . Estimated # genes. Arabidposis. 7 Geng / japonica ( GJ ) genome s ( Methods ), and was increased from 373 Mb to 3 95 1 Mb ( Supplementa l F ig . S 1 A ; Supplemental Table S 6 ) . For representative rice populations, we 2 appl G-OnRamp Beta Users Workshop. Wilson Leung. 07/2016. Outline. Obtain genome assemblies from NCBI. Transfer . large genomics datasets to Galaxy. Common bioinformatics file formats . D. atatypes in Galaxy. CSE291: Personal Genomics for . Bioinformaticians. 01/. 10/17. The personal genomics revolution. 23andMe. : >1 million customers . (. $200). Genographic. Project: . >800,000 customers ($150). Family Tree DNA: . emm1. invasive Group A . Streptococcus. isolated from Belgian patients during 1994˗2013 . J. Coppens. 1. , . B. B. . Xavier,. . J. Sabirova. 1. , C. Lammens. 1. , K. Loens. 2. , S. Malhotra-Kumar.