PPT-Using BLAST to Identify Species from Proteins

Adapted from College Boards Investigation 3 Comparing DNA Sequences to Understand Evolutionary Relationships with BLAST What we know so far We already know that DNA can be used to identify animal species at a genetic level. Learning objectives. Students should understand the following:. Genetic comparisons can be made between different species by direct examination of their DNA or of the proteins encoded by this DNA.. Comparison of DNA base sequences is used to elucidate relationships between organisms. These comparisons have led to new classification systems in plants.. Learning objectives. Students should understand the following:. Genetic comparisons can be made between different species by direct examination of their DNA or of the proteins encoded by this DNA.. Comparison of DNA base sequences is used to elucidate relationships between organisms. These comparisons have led to new classification systems in plants.. a graph . database backed protein analysis software. Thilo Muth. MPI Magdeburg / Germany. (cooperation with CompOmics group in Ghent / Belgium). Life Sciences + Graph Database?. Life scientists are interested in genes, proteins, metabolites, relationships, interactions and biological networks.... Set by. Dibyendu. Das & Arul Mani. Rules. Three sections. Section I: 10 questions. Section II: 25 questions. Section III: 25 two-pointers. 85 points, . not counting bonuses. SECTION I. 10 questions based on Google Doodles. Thermo Fisher / Open Biosystems. Dr. Krishnan K. . Chittur. University of Alabama in Huntsville. Dr. Joseph Ng. University of Alabama in Huntsville. What is BLAST. B.L.A.S.T. stands for . B. asic . L. What would you note about the two left hand birds?. Identify and age this species.. What species is shown here, and what plumage is it in?. Identify both birds.. What else can be noted about the bottom bird?. Adapted from College Board’s “Investigation 3: Comparing DNA Sequences to Understand Evolutionary Relationships with BLAST”. What we know so far.... We already know that DNA can be used to identify animal species at a genetic level. COST Functional Modeling . Workshop. 22-24 April, Helsinki. Large Datasets. RNASeq. data sets and etc.:. large data sets. often there is little functional information available. m. any enrichment analysis tools will not accept large gene lists. 1a. Identify the order, family, species, common name. 1b. What is a common nickname for these birds and what makes them so awesome? 1c. What makes this bird different from other water birds? 1d. Describes this single-ingredient . HMPs. bought from various herbal stores in NYC. . The common name, expected scientific names, and botanical family are provided. Taxonomic identifications (ID) of . HMPs. from web BLAST and/or phylogenetic analysis (indicated with “P”) and from DNA Subway BLAST are indicated for ITS2 DNA barcodes. Scientific names refer to the accepted species names from The Plant List (. for . life.. . The importance of proteins was recognized by chemists in the early 19th century, including Swedish chemist . Jöns. Jacob Berzelius. , who in 1838 coined the term . protein. , a word derived from the Greek . Part 2: Comparing Fluorescent Proteins. 2013 Workshop C: Cloning DNA to Make Proteins. Dina N Kovarik, MS, PhD. NWABR. Fluorescent Proteins are Valuable Tools. Locate proteins in the cell. Track the migration of cells. Biology: Evolution/Embryonic Development. Essential Question. How do we decide what to believe about. evolutionary claims?. Lesson Objectives. Students will be able to:. Compare and contrast organisms using DNA and appearance at various stages of development. . Arya L, Rathinam SR, Lalitha P, Kim UR, Ghatani S, Tandon V. Trematode Fluke Procerovum varium as Cause of Ocular Inflammation in Children, South India. Emerg Infect Dis. 2016;22(2):192-200. https://doi.org/10.3201/eid2202.150051.