PPT-Using BLAST to Identify Species from Proteins

Adapted from College Boards Investigation 3 Comparing DNA Sequences to Understand Evolutionary Relationships with BLAST What we know so far We already know that DNA can be used to identify animal species at a genetic level. Surg Cdr Jane Risdall . Royal Navy. Consultant. . Neuroanaesthetist/Intensivist. Senior Lecturer, Academic Dept Military . Anaesthesia. and Critical Care. Visiting Research Fellow, University of Cambridge. et BLAST . avanc. é. J.. S. .. Bernardes. /H. . Richard. Mat. ériel. :. Bioinformatics and Functional Genomics. Jonathan Pevsner, . Wiley-Blackwell. ed.. Outline. Introduction. . Definition of . Yanbin Yin. Fall 2014. 1. http://. www.ncbi.nlm.nih.gov. /books/NBK52640/. 2. Why you do need to run BLAST in command line terminal?. NCBI’s server does not have a database that you want to search. 03/14/2017. 1. Leonardo . Mariño-Ramírez. NCBI, NIH – Bethesda, USA. NCBI Search Services and Tools. Entrez. . integrated literature and molecular databases. Viewers. BLink. . protein similarities. , Green, Henricks, Jones, Kennedy, . Mawhinney. , . Peluso. , Reilly, Schwartz, Shapiro, . Yanushevsky. Blast Localization and Sensing Technology. Image Courtesy of: . Stanislav. . Klabik. MOTIVATION. Recap : . Pairwise. sequence alignment. Grouping of two sequences to maximize similarity/identity using a scoring system (substitution matrices):. PAM (1,120,250). BLOSUM (80,62,45). Optimal alignment algorithms:. PGY-3 Talk. June 22, 2016. Agenda. Overview & Incidence. Triage. Patterns of Injury. Most Common Injuries: Lung, Head, Ear, and Soft Tissue. Case Questions. The Number and Lethality of Terrorist Attacks Has Been Rising Since the Late 90s. are what most people think of as rocket scientists. They research, design, and develop nearly anything that flies, such as airplanes, spacecraft, and of course rockets. . Blast Off . helps explore how different rocket designs change the ability of the rocket to go great distances. Follow the advice of the station helper to find out if a structure makes a difference and why so you can make the best rocket based on the distance it travels while maintaining a fairly straight path. Xuhua Xia. xxia@uottawa.ca. http://dambe.bio.uottawa.ca. Why string matching?. Early applications: . Sequence similarity between an oncogene (genes in viruses that cause a cancer-like transformation of the infected cells), v-sis, and the platelet-derived growth factor (PDGF). Healthy hydration - the average person drinks 5.2 beverages a day.. No empty calories and dead nutrition.. . . . . . . . The average cola has 22 grams . of sugar . per 8 oz. . What is Oxy Blast?. Oxy Blast is a high quality hydrogen peroxide.. Oxy Blast is a stabilized hydrogen peroxide based product.. Oxy Blast has proprietary homeopathic ingredients to help better the health of the user.. Outline. A brief introduction on various kind of BLAST. Different Sequences: introduction of NCBI and FASTA format. Web version BLAST. BLAST on Linux system. An application of BLAST on Bioengineering. Part 2: Comparing Fluorescent Proteins. 2013 Workshop C: Cloning DNA to Make Proteins. Dina N Kovarik, MS, PhD. NWABR. Fluorescent Proteins are Valuable Tools. Locate proteins in the cell. Track the migration of cells. Arya L, Rathinam SR, Lalitha P, Kim UR, Ghatani S, Tandon V. Trematode Fluke Procerovum varium as Cause of Ocular Inflammation in Children, South India. Emerg Infect Dis. 2016;22(2):192-200. https://doi.org/10.3201/eid2202.150051.