PPT-Data Science for High-Throughput Sequencing

Author : dudeja | Published Date : 2020-08-27

TexPoint fonts used in EMF A A A A A A A A A A A A A A A A Lecture 1 Instructor David Tse dntsestanfordedu The Genome ACGTGACTGAGGACCGTG CGACTGAGACTGACTGGGT CTAGCTAGACTACGTTTTA

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Data Science for High-Throughput Sequencing: Transcript

TexPoint fonts used in EMF A A A A A A A A A A A A A A A A Lecture 1 Instructor David Tse dntsestanfordedu The Genome ACGTGACTGAGGACCGTG CGACTGAGACTGACTGGGT CTAGCTAGACTACGTTTTA. Alizadeh. , Albert Greenberg, David A. . Maltz. , . Jitendra. . Padhye. . Parveen. Patel, . Balaji. . Prabhakar. , . Sudipta. . Sengupta. , . Murari. . Sridharan. . Microsoft Research Stanford University. common use in biology. ese technologies produce millions of short sequence reads and are routinely being applied to genomes, epigenomes and transcriptomes. Sequencing steady-state RNA in a sample, microlens. array. Antony Orth and Kenneth . Crozier. 8 . May. CLEO . 2012. Microscopy with lens arrays. What is high . thoughput. microscopy?. Experimental setup – . confocal. system. Lens array characteristics, resolution. Microscope in the Big Data Era. TexPoint fonts used in EMF: . A. A. A. A. A. A. A. A. A. A. A. A. A. A. A. A. Sreeram. . Kannan. and David Tse. Tutorial. ISIT 2014. Research supported by NSF Center for Science of Information.. :. informatics & software aspects. Gabor T. Marth. Boston College Biology . Department. BI543 Fall 2013. January 29, 2013. Traditional DNA sequencing. Genetics of living organisms. DNA. Chromosomes. Dec 2011 – 758 sequencers. Apr 2012 – 823 sequencers. Biomedical Research. 1. – © 2012 Internet2. Source: . http://omicsmaps.com. /. , Dec. 5, 2011. Increasing at 25% per year. Image:. . Illumina. Is GENI ready for Science?. Personnel. Paul Ruth (PI) . pruth@renci.org. Anirban. . Mandal. . anirban@renci.org. Jeffery L. . Tilson. . jtilson@renci.org. Brian Blanton . bblanton@renci.org. Domain Science Applications. Harlan Robins. 1,2. Cindy Desmarais. 2. , Chris Carlson. 1,2. Fred . Hutchinson Cancer Research . Center, Seattle, WA. 1. , Adaptive . TCR. Technologies, Seattle, WA. 2. For additional information about . Olivier Elemento, PhD. TA: Jenny Giannopoulou, PhD. Institute for Computational Biomedicine. CSHL High Throughput Data Analysis Workshop, . June 2012. Plan. 1. What high-throughput sequencing is used for. . Nearly . all modern DNA sequencing procedures require a concentrated amount of . single-stranded . DNA known as a . template. . A template is simply a piece of DNA of . sufficient . length and quality to allow for its sequencing (most sequencing methods . Understanding New Tools from Federal Chemical Testing Programs . Linda Birnbaum. , Ph.D., D.A.B.T., A.T.S.. Director, National Institute of Environmental Health Sciences and National Toxicology Program. forum on microbial threats. Emil P. . Lesho. , DO, FACP, FIDSA, FSHEA. Colonel, Medical Corps, U.S. Army. Combating Antimicrobial Resistance with Big Data: . A CERN . openlab. / Intel collaboration. Niko Neufeld, CERN/PH-Department. niko.neufeld@cern.ch. HTCC in a nutshell. Apply upcoming Intel technologies in an Online / Trigger & DAQ context. Application domains: L1-trigger, data acquisition and event-building, accelerator-assisted processing for high-level trigger. :. Computational Analysis of the Current State, Bottlenecks and Future Directions. Damla Senol. 1. , Jeremie . Kim. 1,3. , . Saugata Ghose. 1. , Can Alkan. 2. and Onur Mutlu. 3,1. 1 . Department of Electrical and Computer Engineering, Carnegie Mellon University, Pittsburgh, PA, USA.

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