PPT-Reference genomes and public databases

A reference genome also known as a reference assembly is a digital nucleic acid sequence database assembled by scientists as a representative example of a species set of genes Public databases. Frederic Murray. Assistant Professor . MLIS, University of British Columbia. BA, Political Science, University of Iowa. . Instructional Services Librarian. Al Harris Library . frederic.murray@swosu.edu. 2014 Workshop. G . × . E ANALYSIS. Diego . Jarquin. Chicago, IL. December 10. Variance components for common . inbreds. and hybrids. Genomes to Fields . Inbred – Pollen DAP. Inbred – Plant height. What are databases?. Databases are a collection tables that are searchable. These databases are filled with periodical materials (newspapers, journals, magazines, and even blog posts). These databases prevent you from having to go from journal to journal by hand. Life Without Databases: Lists. Lists are often sufficient for simple tasks. Not appropriate for complex information. Multiple lists lead to. Data redundancy. Data inconsistency. Duplicate data. Sorting issues . Distinguish between the physical and logical views of . data.. Describe how data is organized: characters, fields, records, tables, and . databases.. Define key fields and how they are used to integrate data in a database.. presentation and training. Databases. Databases contain information gathered from thousands of scholarly journals, books, book series, reports, conferences, and more. . Databases can be used for narrowing/ enlarging the research topic, verifying citations, and protocols/ patent search. . ~Max Frisch. (Swiss playwright, novelist, philosopher, social critic). Contents. Citing Databases. General Info. MLA. APA. Visuals—Internal Citations. MLA. APA. Visuals—Bibliographic Citations. MLA. Faculty of Science. Lagos State University. . Databases of Insect genomic resources: a review . Abdulazeez. Giwa. 1. *, . Oluwasegun. Gbenle. 2. and . Abiodun. . Denloye. 1. . . 1. Department of Zoology and Environmental Biology, Lagos State University, . Outline. What is a “reference genome. ?”. History and examples of . reference-building. When is a reference genome useful. ?. Reference genome assemblies: definition. Database of ordered nucleotides. Circularly Permuted Genomes. Some phages have circularly permuted genomes. This means a linear concatamer of phage DNA is synthesized, used to fill a phage head, then cut when the head is full. Generally, one head will fit more than 100% of a genome, say, 103-110%. This ensures that wherever the DNA is cut, at least one working copy of each gene is present.. Skin SSG . May 2018. Catherine Carpenter-Clawson, Programme Manager, WE GMC. Courtesy of Genomics England. From . Genetics . to . Genomics. Genetic testing = single gene. (. s. ). or panels. . Exome sequencing = coding DNA . UNIT IV. DATABASE. A database is a . computarised. library used to store and organize data in such a way that information can be retrieved easily via a variety of search criteria.. The development of databases to handle the vast amount of molecular biological data is a fundamental task of bioinformatics.. Campadelli-Fiume G, Mirandola P, Menotti L. Human Herpesvirus 6: An Emerging Pathogen. Emerg Infect Dis. 1999;5(3):353-366. https://doi.org/10.3201/eid0503.990306. era. The rise of bioinformatics. An information explosion!. Bioinformatics. Computational tools are developed to collect, organize and analyze a wide variety of biological data. Advances in DNA sequencing technologies have accelerated the pace of discovery. Much of the process is now automated. .