PPT-Reproducible Research

in Secondary Data Analysis Abraham D Flaxman November 18 2014 Outline Reproducible research Secondary data analysis Doing Both Together Reproducible secondary data Reproducible data analysis. Leeper Abstract Reproducible research and data archiving are increasingly important issues in research involving statistical analyses of quantitative data This article introduces the dvn package which allows R users to publicly archive datasets anal We argue that the emergence of new tools particularly in the opensource community have greatly eased the burden of documenting and archiving both empirical and simulation work in econometrics Some of these tools are highlighted in the discussion of The case of English Short-Title Catalogue (ESTC) Metadata. Mikko Tolonen, Leo Lahti, Maija Paavolainen et al.. University of Helsink. i. LIBER 20. 15. Outline of the talk. What is. “. reproducible research. Dave Beck. dacb@uw.edu. http://. faculty.washington.edu. /~. dacb. Background. Methane (CH. 4. ) is a greenhouse gas. 85x more potent than CO. 2. Atmospheric [. CH. 4. ] . have increased 150% / 200 years. Joseph L. Hellerstein. Senior Data Science Fellow. eScience. Institute. University of Washington. Background. (New Scientist). (Reuters). Reproducibility is a foundation of science.. Reproducibility is the ability of an entire experiment or study to be reproduced, either by the researcher or by someone else working independently. http://www.feinberg.northwestern.edu/sites/bcc/. Basic Biostatistics in Medical Research: . Emerging Trends. November 14, 2013. Leah J. Welty, PhD. Biostatistics Collaboration Center. http://www.newyorker.com/reporting/2010/12/13/101213fa_fact_lehrer. Chris Stoeckert. Dept. of Genetics, Perelman School of Medicine. CHOP. /Penn NGS Symposium. June 17, 2011. Why worry about reproducible research?. Genotyping and expression analysis of patients is common.. Recomputable HCI Research A personal perspective, & A collective experiment Miguel A. Nacenta Reproducibility • Cornerstone of empirical methods – How can be sure otherwise? – W . from . DARPA’s. . Progams. in. Human Language Technology. Mark . Liberman. University of Pennsylvania. http://ling.upenn.edu/~myl. The story begins in the 1960s…. … with two bad reviews by John Pierce,. Reproducible Research in Minutes. Reproducible Research is the new paradigm. And more graphics should be interactive. So, why don’t people do it?. Never learned how. It’s a hassle . No consistent platform. Marco . Canini (KAUST) and Jon Crowcroft (. University of Cambridge). What it takes to do reproducible research?. It is actually hard work for both authors and reproducers. Produce solid artifacts. Create, package, share reproducible experiments. http://www.feinberg.northwestern.edu/sites/bcc/. Basic Biostatistics in Medical Research: . Emerging Trends. November 14, 2013. Leah J. Welty, PhD. Biostatistics Collaboration Center. http://www.newyorker.com/reporting/2010/12/13/101213fa_fact_lehrer. Marco . Canini (KAUST) and Jon Crowcroft (. University of Cambridge). What it takes to do reproducible research?. It is actually hard work for both authors and reproducers. Produce solid artifacts. Create, package, share reproducible experiments. Adam Asare, PhD. Director, Data Analysis . 12/11/2012 . Reproducibility of results in published literature. 2. Ionnidis. , P. et al. . Repeatability of published microarray gene expression analyses. Nat Gen , 41:2, Feb 2009 .