PPT-Accelerating Read Mapping with

FastHASH Hongyi Xin Donghyuk Lee Farhad Hormozdiari Samihan Yedkar Can Alkan Onur Mutlu Carnegie Mellon University . . Krumlov. January 2012. Mapping and variant calling. from short read data. Gerton Lunter. Wellcome. Trust Centre for Human Genetics. Oxford. June 26, 2000: “G-Day”. Completion of the Working Draft of the Human Genome. : mapping massive amount of oligonucleotides to the genome. Hui. Jiang . et al.. Bioinformatics (2008) 24: 2395-2396. The . GNUMAP. algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing. LPAR 2008 . –. Doha, Qatar. Nikolaj . Bjørner. , . Leonardo de Moura. Microsoft Research. Bruno . Dutertre. SRI International. Satisfiability Modulo Theories (SMT). Accelerating lemma learning using joins. Computations . to GPUs. Graphics processors (GPUs) and other . “wide SIMD” multiprocessors . are becoming . a dominant force in high-performance computing.. How do we effectively use them for . streaming applications . From Raw to Analysis-ready Reads. Ben Passarelli . Stem Cell Institute Genome Center. NGS Workshop. 31 MAY 2013. From Raw to Analysis-ready Reads. Session Topics. Overview of high-throughput sequencing platforms. . Krumlov. January 2012. Mapping and variant calling. from short read data. Gerton Lunter. Wellcome. Trust Centre for Human Genetics. Oxford. June 26, 2000: “G-Day”. Completion of the Working Draft of the Human Genome.  . G. Riddone. 25.06.2010. CLIC meeting . Contribution from R. Nousiainen, J. Huopana, T. Charles. Content . Recall of main issues. Recall of module heat dissipation . Module cooling scheme. Thermo-mechanical analysis: . From Raw to Analysis-ready Reads. Ben Passarelli . Quake Lab. NGS Workshop. MAY 30,2014. From Raw to Analysis-ready Reads. Session Topics. Brief. overview of high-throughput sequencing platforms. Understand read data formats and quality scores. S.V. Kuzikov. 1. , A.A. Vikharev. 1. , J.L. Hirshfield. 2,3. 1. Institute of Applied Physics RAS, Nizhny Novgorod, Russia. 2. Yale University, New Haven, CT, USA. 3. Omega-P, Inc., New Haven, CT, USA. W. Wuensch. 11-12-2009. Accelerating structure assembly. Pulsed ΔT in accelerating structure. Beam-loading compensation. Reacting to breakdown. On/off/ramp mechanism. Dynamic vacuum. Refining design and 10% parameter consistency. germslab.org. @. teeniedeenie. Today’s Schedule. Morning. Mapping and assembly basics lecture. Tutorial – BASH for genomics. Afternoon:. Tutorial – Variant Calling. FUN IN THE SUN!. Evening:. Lecture – Teach me scripting. these tools may offer educators as yet unrealised and potentially complementary functions to aid The over-riding aim of all mapping tools is similar. If students can represent or manipulate a complex j.abbott@dundee.ac.uk. From your home directory, run the following command:. [jabbott@login2 ~]$ . wget. . https://dag.compbio.dundee.ac.uk/workshops/downloads/read_mapping.sh. Now run. [jabbott@login2 ~]$ . 16. th. August 2019. Alignment basics. NGS alignment issues. Reference sequences. BWA. File formats. Post-processing. Viewing alignments in genome browsers. Multi-mapping reads. DAG Workflows: map-bwa-mem-.