PPT-Characterizing the Phylogenetic Tree-Search Problem

Daniel Money And Simon Whelan Anusha Sura What is this A phylogenetic tree or evolutionary tree is a branching diagram or tree showing the inferred evolutionary relationships among various biological species or other entities. Tools. Tara and . Pawel. Concept Map. Start with Known Sequence. Download MEGA (Molecular Evolutionary Genetics Analysis). http://www.megasoftware.net/. Use MEGA Web Browser to Find Related Sequences. Supervisor. : . Dr. . Yiu. . Siu. Ming. Second Examiner. : . Professor Francis . Y.L.. Chin. Student. : Vu . Thi. . Quynh. . Hoa. Contents. Introduction. Motivation. Related Work. Project Plan. Problem Definitions. Molecular phylogenetic methods 4. 11-10-2011. Maximum likelihood methods. So far we have only considered a single . site (configuration). . The likelihood for all sites is the product of the likelihoods for each site if all the sites evolve independently. . Trees. AP Biology. Evolution. Phylogenetic. Trees. By Bob Cooper and Mark Eberhard. Learning Objectives. Use gel electrophoresis to create DNA and/or amino acid . seuquences. Use DNA and amino acid sequence to create a matrix. sequence . alignments . Kyrylo. . Bessonov. November 26th, 2013. Talk plan . How to build phylogenetic trees of types. Unrooted. Rooted. Context . comparison of viral proteins of dengue virus. Examples on phylogenetic tree building. Represent traits that are either derived or lost due to evolution . definitions. evolutionary history of a species or group of species. discipline focused on classifying organisms & determining their evolutionary relationships. Spring . 2016. Transform & conquer. transform-and-conquer approach. presorting. balanced search trees, heaps. Horner's Rule. problem reduction. Transform & conquer. the idea behind transform-and-conquer is to transform the given problem into a slightly different problem that suffices. Phylogenies. Dr Laura Emery . Laura.Emery@ebi.ac.uk. www.ebi.ac.uk. /training. Objectives. After this tutorial you should be able to…. Use essential phylogenetic . terminology . effectively. Discuss aspects of phylogenies and their implications for phylogenetic . Watanabe S, Maeda K, Suzuki K, Ueda N, Iha K, Taniguchi S, et al. Novel Betaherpesvirus in Bats. Emerg Infect Dis. 2010;16(6):986-988. https://doi.org/10.3201/eid1606.091567. Silling S, Wieland U, Werner M, Pfister H, Potthoff A, Kreuter A. Resolution of Novel Human Papillomavirus–induced Warts after HPV Vaccination. Emerg Infect Dis. 2014;20(1):142-145. https://doi.org/10.3201/eid2001.130999. Phylogenetics . Phylogenetics. is the study of evolutionary relationships among a group of organisms.. Phylogenetic analysis . is the means of . inferring or estimating these relationships.. The result of phylogenetic studies is a hypothesis about the evolutionary history of taxonomic groups: their . Introduction to evolution. Introduction to phylogenetic trees. Build a phylogeny 1. Build a phylogeny 2. Applying phylogenetic trees. Learning objectives. Be able to read a phylogenetic trees and predict evolutionary relationships. Nielsen SC, Mourier T, Baandrup U, Søland T, Bertelsen M, Gilbert M, et al. Probable Transmission of Coxsackie B3 Virus from Human to Chimpanzee, Denmark. Emerg Infect Dis. 2012;18(7):1163-1165. https://doi.org/10.3201/eid1807.111689. software. Marjana . Westergren, . Tine . Grebenc . Molecular. . markers. Molecular. . markers. = . fragment of DNA that is associated with a certain location within the . genom. e or . other. . characteristic.