PPT-Part one An Introduction to Phylogenetic
Author : faustina-dinatale | Published Date : 2018-10-22
Methods Dr Laura Emery LauraEmeryebiacuk wwwebiacuk training Objectives After this tutorial you should be able to Discuss a range of methods for phylogenetic
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Part one An Introduction to Phylogenetic: Transcript
Methods Dr Laura Emery LauraEmeryebiacuk wwwebiacuk training Objectives After this tutorial you should be able to Discuss a range of methods for phylogenetic inference their advantages. Mutually negative interaction between two species in the same guild or . trophic. level. Changes in abundance, fitness, or some fitness component (growth, feeding rate, body size, survival). Topics for today. Central question in community ecology. What processes are responsible for the identity and relative abundances of co-occurring species in local assemblages?. What is the relative importance of different ecological processes in structuring communities. Tandy Warnow. The Department of Computer Science. The University of Texas at Austin. Metagenomic. . Taxon. . Identification. Objective: classify short reads in a metagenomic sample. 1. . What. is . Dwyane George. February 24, 2015. 18.434. Outline. Introduction & Motivation. Definition. Algorithm & Proof of Correctness. Unweighted. Pair Group Method with Arithmetic Mean (UPGMA). Algorithm Runtime. The world comes in fragments. Species abundance matrix . M. Phylogenetic distance matrix . P. Species trait matrix . T. Environmental variable matrix . V. Interdepen-dence. matrix . X. Species. Species. Dr Laura Emery . Laura.Emery@ebi.ac.uk. www.ebi.ac.uk. Objectives. After this . tutorial you . should be able to. …. Discuss . a range of . methods for . phylogenetic . inference, their advantages. Dr Laura Emery . Laura.Emery@ebi.ac.uk. www.ebi.ac.uk. Objectives. After this . tutorial you . should be able to. …. Discuss . the impact of a range of biological phenomena upon phylogenetic . inference. Silling S, Wieland U, Werner M, Pfister H, Potthoff A, Kreuter A. Resolution of Novel Human Papillomavirus–induced Warts after HPV Vaccination. Emerg Infect Dis. 2014;20(1):142-145. https://doi.org/10.3201/eid2001.130999. Nielsen SC, Mourier T, Baandrup U, Søland T, Bertelsen M, Gilbert M, et al. Probable Transmission of Coxsackie B3 Virus from Human to Chimpanzee, Denmark. Emerg Infect Dis. 2012;18(7):1163-1165. https://doi.org/10.3201/eid1807.111689. Takada N, Fujita H, Kawabata H, Takajo I, Sakata A, Takano A, et al. Spotted Fever Group Rickettsia sp. Closely Related to R. japonica, Thailand. Emerg Infect Dis. 2009;15(4):610-611. https://doi.org/10.3201/eid1504.071271. Tandy Warnow. Department of Computer Science. The Computational Historical Linguistics Project. http://. tandy.cs.illinois.edu. /. histling.html. Collaboration with Don . Ringe. began. in 1994; 17 papers since then, and two . Jasmin . sutkovic. What are those?. Phylogenetic trees . represent . the evolutionary relationships among a set of organisms or groups of . organisms. These organisms are c. alled. . taxa (singular: taxon) that are believed to have a common ancestor. Terminology. phylogeny . evolutionary history of a species or group of species. systematics. . classifying and determining evolutionary relationships of organisms . taxonomy . classifying and naming of organisms. Guan D, Li W, Su J, Fang L, Takeda N, Wakita T, et al. Asian Musk Shrew as a Reservoir of Rat Hepatitis E Virus, China. Emerg Infect Dis. 2013;19(8):1341-1343. https://doi.org/10.3201/eid1908.130069.
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