Monday 26 830 900 Welcome and practical instructions 0900 1030 Introduction to next generation sequencing NGS technologies and challenges Li Yin University of Florida Gainesville FL USA ID: 818084
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VEME 2013 - Analysis of Large Datasets M
VEME 2013 - Analysis of Large Datasets ModuleMonday 268:30 - 9:00Welcome and practical instructions09:00 - 10:30Introduction to next generation sequencing (NGS): technologies and challengesLi Yin (University of Florida Gainesville, FL, USA)10:30 - 11:00Coffee break and Poster Viewing11:00 - 12:30Introduction to statistical learning (SL)Mattia Prosperi (University of Manchester, UK)12:30 - 13:30Lunch13:30 - 14:30Introduction to large scale computing and NGS softwareOleksander Moskalenko (University of Florida Gainesville, FL, USA)14:30 - 15:30Overview on NGS software (multi-platform, platform-dependent, programming paradigms) and integrated solutions (e.g. UGene, Geneious, Galaxy, CLC bio)Oleksander Moskalenko & Matt Gitzendanner (University of Florida Gainesville, FL, USA)15:30 - 16:00Coffee break and Poster Viewing16:00 - 17:30Biostat primer: distributions and univariable testsMattia Prosperi (University of Manchester, UK)Tuesday 2708:30 - 10:30SL theory: model, serach & optimization algorithmsAndre Altmann (Stanford University, CA, USA)10:30 - 11:00Coffee break and Poster Viewing11:00 - 12:30NGS theory: reference mapping and error correction algorithmsMattia Prosperi (University of Manchester, UK)12:30 - 13:30Lunch Break13:30 - 15:30SL practicaI session: R and Weka15:30 - 16:00Coffee break and Poster Viewing16:00 - 17:30NGS practical session: Bowtie, KEG, Segminator II, QuRE, ShoRAHMattia Prosperi (University of Manchester, UK) / Soo-Yon Rhee (Stanford University)Wednesday 08:30 - 10:30SL theory II: tree-based learning, goodness-of-fit function, performance assessment and methiods for feature selectionAndre Altmann (Stanford University)10:30 - 11:00Coffee break and Poster Viewing11:00 - 12:30Andre Altmann (Stanford University)12:30 - 13:30Lunch13:30 - 16:00Free computer timeMattia Prosperi (University of Manchester, UK) / Soo-Yon Rhee & Andre Altmann (Stanford University, CA, USA)16:00 - 16:30Coffee break and Poster Viewing16:30 - 17:30Keynote LectureMaureen M Goodenow (University of Florida gainesville, FL, USA)17:30 - 19:30 Poster session and Teacher's MeetingThursday 2908:30 - 10:30Andre Altmann (Stanford University, CA, USA)10:30 - 11:00Coffee break and Poster Viewing11:00 - 12:30NGS practical session: QuRe, ShoRAHMattia Prosperi (University of Manchester, UK) / Soo-Yon Rhee (Stanford University)12:30 - 13:30Lunch13:30 - 15:30NGS practical session: SHARCGS and other de novo assemblersOleksander Moskalenko & Matt Gitzendanner (University of Florida Gainesville, FL, USA)15:30 - 16:00Coffee break and Poster Viewing16:00 - 17:30Soo-Yon Rhee & Andre Altmann (Stanford University, CA, USA) / Mattia Prosperi (University of Manchester, UK) Friday 3008:30 - 09:30Interdisciplinary lecture: application of NGS in HIV-1 and immunoglobulin studiesLi Yin (University of Florida Gainesville, FL, USA)09:30 - 10:30Interdisciplinary lecture: partition of large phylogenetic treesMattia Prosperi (University of Manchester, UK)10:30 - 11:00Coffee break and Poster Viewing11:00 - 12:30Interdisciplinary lecture: inference of large phylogenies Heiko Schmidt (University of Vienna, Austria)12:30 - 13:30Lunch13:30 - 15:30Free computer timeMattia Prosperi (University of Manchester, UK) / Oleksander Moskalenko (University of Florida Gainesville, FL, USA)15:30 - 16:00Coffee break16:00 - 17:30Q&A session: power and pitfalls of phylogeny inferenceAnne-Mieke Vandamme/Tulio de Oliveira/Marco Salemi/Rebecca Rose/Mattia Prosperi