PDF-VEME 2013 - Phylogeny Inference Module

0830 900 Welcome and practical instructions 900 1030 Fundamentals of molecular evolution theory AnneMieke Vandamme Catholic University of Leuven Belgium 1030 1100 Coffee break and Pos. Presented By: Ms. . Seawright. What does it mean to make an inference?. Make an inference.. Use what you already know.. The inference equation. WHAT I READ. Use quotes from the text and not page number for future references. Chris . Mathys. Wellcome Trust Centre for Neuroimaging. UCL. SPM Course (M/EEG). London, May 14, 2013. Thanks to Jean . Daunizeau. and . Jérémie. . Mattout. for previous versions of this talk. A spectacular piece of information. #4. Philosophy. What We Will Cover in This Module . Referee Uniform Requirements. Attitude & Composure . Fitness & Nutrition. Pre-Game and Post-Game duties. 2013. 2. Module . #4 Philosophy . - CLA . Phylogenies. The process of evolution produces a pattern of relationships between species. . As . lineages evolve and split and modifications are inherited, their evolutionary paths diverge. . This . Phylogeny. The evolutionary history of a species or group of species. . Convergent Evolution. A process in which species from different evolutionary branches may come to resemble each other if they live in similar environments and natural selection favored similar adaptions.. Molluscan Phylogeny 1307 Table 1 Previous Results on Molluscan Phylogeny on the Basis of Molecular Data NUMBER OF SEQUENCES AUTHOR(S) GENE OR PROTEIN Other Mol- Meta- lusca zoa TREE CONSTRUCTION METHO “Inferring Phylogenies” . Joseph Felsenstein. Excellent reference. What is a phylogeny?. Different Representations. Cladogram - branching pattern only. Phylogram - branch lengths are estimated and drawn proportional to the amount of change along the branch. Haeckel’s evolutionary trees are among the first attempts at phylogeny inference.. Darwin’s tree. Schools of thought. A. Evolutionary Taxonomy. The basic view was that the best way to reconstruct the phylogeny of a group is to spend a lifetime learning everything one can about the biology of the group.. Section 1.3. Learning Goals. We are exploring modern classification of species using phylogeny.. We are learning to use phylogenetic trees to identify common ancestors.. Modern Taxonomy. traditional classification grouped species according to morphology (body, shape, size and other structural features) . Monday 26 8:30 - 9:00 Welcome and practical instructions 09:00 - 10:30 Introduction to next generation sequencing (NGS): technologies and challenges Li Yin (University of Florida Gainesville, FL, USA) Veme Queering Phoenix : Queer Identity in Metropolitan Phoenix Elsa Bea Velásquez Veme: Queering Phoenix is a multidisciplinary photographic project designed to shed light and bring awareness to Monday 26 08:30 - 9:00 Welcome and practical instructions 9:00 - 10:30 Experimental design and Phylodynamic inference Melissa Norstrom (Karolinska Institute, Stockholm, Sweden) 10:30 - 11:00 Coffee br Johanne Ahrenfeldt . PhD Student. Overview. What is Phylogeny? . How has it been used in the past?. Advantages of WGS based phylogeny. - Vibrio . cholerae. . case. BREAK. How are we using it?. CSI phylogeny & . . Streptomycetaceae. Alan Ward. Motivation. Streptomyces . taxonomy. 16S. Whole genome sequencing. A bigger 16S phylogeny. Where is the diversity. The type strains.