PPT-1 Massively Parallel Genomic Sequence Search on Blue Gene/P

Heshan Lin NCSU Pavan Balaji ANL Ruth Poole Carlos Sosa IBM Xiaosong Ma NCSU amp ORNL Wu Feng VT 2 Sequence Search Fundamental tool in computational biology Search similarities between a set of query sequences and sequence databases DBs. Unlike sequential algorithms parallel algorithms cannot be analyzed very well in isolation One of our primary measures of goodness of a parallel system will be its scalability Scalability is the ability of a parallel system to take advantage of incr Fikret Isik. Associate . Professor. September 16, 2013. Genomic BLUP - UofCopenhagen. 1. Cooperative Tree Improvement Program. North Carolina State University, Raleigh, . USA. Outline. Background. Realized genomic relationships. Goals for Rest of Course. Learn how to program massively parallel processors and achieve. high performance. functionality and maintainability. scalability across future generations. Acquire technical knowledge required to achieve the above goals. Zhicong Huang, Erman Ayday, Jacques Fellay, Jean-Pierre Hubaux, Ari Juels. Presented by Chuong Ngo. The Genomic Future. The Genomic Future. The Genomic Future. The Genomic Future. The Genomic Future. Vasilios Mitrokostas. 2. An introduction to Internet Telephony. How VoIP works. Modern VoIP implementations. VoIP in massively multiplayer online gaming. Final thoughts. 2. Voice over Internet Protocol. Tour of the major . molecular biology databases. A database is an . indexed. . collection. of information. There is a tremendous amount of information about biomolecules in publicly available databases. . Dr Susan Cartwright. Dept of Physics and Astronomy. University of Sheffield. Parallel Universes. Are you unique?. Could there be another “you” differing only in what you had for breakfast this morning?. Genomic Medicine. In announcing on June 26, 2000, that the first draft of the human genome had been achieved, President Clinton said it would “revolutionize the diagnosis, prevention and treatment of most, if not all, human diseases.”. Jack K. . Okamuro. National Program Leader for Plant Biology, . Crop . Productoin. & Protection, USDA-ARS. ARS Administrator’s Council Meeting. December 5, 2012. Beltsville, MD. Challenge. Food Security & Sustainability. exposomic. findings to realize the precision medical care in Tohoku Medical Megabank. 0. Division of . Bioclinical. . Imformatics. Tohoku Medical Megabank Organization, . Tohoku University. Hiroshi Tanaka, . Dina Paltoo, Ph.D., M.P.H.. NIH Office of Science Policy. Laura Lyman Rodriguez, Ph.D.. National Human Genome Research Institute. October 4, 2017. Housekeeping. Participants must register to join the webinar. Med icago trunca t u l a h a nd boo k v e r s i o n Nov e mb er 200 6 Andrea Seres * , Gábor Deák * , Gábor Tóth * , Grégoire Aubert + , Judith Burstin + , Noel Ellis # , György B. Kiss * * A assemble. , annotate, and curate the sunflower reference . genome; . integrate . the reference sequence with genetic and physical maps, EST collections, diversity panel sequences, wild species genomes, and QTL and association mapping data; . Dr. Breno Fragomeni. Assistant Professor. Animal Science - UConn. Where are the labels?. Introduction . Why genomic prediction?. Higher accuracy. Shorter generation interval . Higher genetic gain. Genetic gain per year.