PPT-Stubbs Lab Bioinformatics –

5 Review tophat alignment summary and htseq count exercises MDS plots and Differential expression Dec 06 2016 Joe Troy Agenda Review key points of the alignment process Review the alignment summary report . G.Gibson. Homework. 3. Mylène Champs. Marine Flechet. Mathieu . Stifkens. 1. Bioinformatics - GBIO0009-1 - . K.Van. Steen University of . Buttigieg. Briefings in Bioinformatics 2010. Perspectives on presentation and. pedagogy in aid of bioinformatics. education. Flow of Today’s presentation. Key points of the paper. Quick(. ish. ) demonstration. Bioinformatics and Genomics. Applications:. Personalized cancer medicines. Disease determination . Pathway Analysis. Biomarker Discovery . An Interesting Point. “One . article estimated that the output from genomics may soon dwarf data heavyweights such as . Outline. Introduction/Questions. Explain . user space (home directories) vs share space (. lab directories/shares).. Working . in a team, file/folder . permissions.. The . module system, when to request software, when to install software . Provided by WV-INBRE. Mary E. Davis, Ph.D.. Bioinformatics Core Director. Outline. Overview of WV-INBRE. Technology supported. Agilent microarray. Illumina. HiSeq1000 (Next Generation Sequencing). Bioinformatics analysis resources supported. Jordan Ramsdell, Feseha Abebe-Akele and W. Kelley Thomas, University of New Hampshire. Onsite workshops / lectures, including:. Introduction to Genomics and Bioinformatics. Changing your relationship with your computer. . uses computer programs to access molecular. . biology databanks to make inferences about the. . information contained within the data archives.. This lab introduces you to some of the main. . databanks, their applications, and programs.. Why is starch agar used?. -To see if saliva was present and broke down the starch.. Positive control . –used to show what the change looks like. Negative control. – used to what no change looks like. High-throughput Data Analysis. Literature Study. Data Mining . Functional Genomics Analysis. Vector NTI Advance®. Software. License type. License number. 2008. 2009. 2010. 2011. 2012. 2013. 2014. Galaxy. Jan - June 2015. Consulting researchers on bioinformatics tools, data analysis, data management, . and interpretation of experimental . data.. Analyzing of high. -throughput . sequencing data and conducting . The term ‘Bioinformatics’ was first introduced in 1970 by . Paulien. . Hogeweg. . to refer to the study of information processes in biotic systems. While some people define the term as “. An integration of computer, mathematical and statistical methods to manage and analyze biological information. Dr. . Matthew . Cserhati (UNMC). Nebraska . Wesleyan. Phage Symposium. April 15, 2016. Personal introduction. MSc: . biology. , . Eotvos Lorand University, Hungary. BSc: . University of Szeged, . software engineering, Hungary. , . B.Sc. Biotech Teaching Assistant. Omdurman Islamic University. Bioinformatics Topics. Informatics. Biology. Operating Systems. Windows. , . Macintosh . both offer an intuitive . GUI . … familiarity . Lonnie . Welch, . Fran . Lewitter. , . Russell . Schwartz, . Cath. . Brooksbank. , . Predrag. . Radivojac. , . Bruno . Gaeta, Maria . Victoria . Schneider . Curriculum Task Force for ISCB Education Committee .