PPT-Bioinformatics analysis of a sweet potato

Bioinformatics analysis of a sweet potato RNASeq experiment from sequences to pathways Rolando Morán 1 María Elena Ochagavía 2 Cathie Martin 3 Aylin Nordelo 1 Chris Watkins 4 1. The sweet, orange-colored root vegetable is one of the oldest vegetables known to mankind. . . The crop was introduced into China in the late 16th century and spread through Asia, Africa, and Latin America during the 17th and 18th centuries. . . Jay Bost TPSS. . University of Hawaii. 1789 . watercolour. . by . Delahaye. . Hawaiian Heirloom Sweet Potatoes. Problems. Hawaii’s dependence on imported food. Ex situ collections of sweet potato understudied and poorly characterized. Introducing Programming in Genetics Classes. Ogun. . Adebali. , Ed . Himelblau. , . Ioannis. . Tsiligaridis. A Bridge to Bioinformatics Tools. Goals:. -Reinforce material learned in the genetics . c. Outline. Introduction/Questions. Explain . user space (home directories) vs share space (. lab directories/shares).. Working . in a team, file/folder . permissions.. The . module system, when to request software, when to install software . Provided by WV-INBRE. Mary E. Davis, Ph.D.. Bioinformatics Core Director. Outline. Overview of WV-INBRE. Technology supported. Agilent microarray. Illumina. HiSeq1000 (Next Generation Sequencing). Bioinformatics analysis resources supported. High-throughput Data Analysis. Literature Study. Data Mining . Functional Genomics Analysis. Vector NTI Advance®. Software. License type. License number. 2008. 2009. 2010. 2011. 2012. 2013. 2014. Galaxy. Section 1: Introduction and biological databases.. Section 2: Sequence alignment.. Section 3: Gene and promoter prediction.. Section 4: Molecular phylogenetics.. Section 5: Structural Bioinformatics. computer science, mathematics, information technology and statistics. to analyze the biological data like . genomics, Protein structure prediction, . Pharmaco-phore. modeling , toxicity prediction and drug designing.. �� Govind Ballabh University of Agriculture and Technology Abstract- Bioinformatics plays a significant role in the development of the agricultural sector, agro-based industries, ag Petrus Tang, Ph.D. (. 鄧致剛. ). Graduate Institute of Basic Medical Sciences. and. Bioinformatics Center, Chang Gung University. .. petang@mail.cgu.edu.tw. EXT: . 5136. 助教：. 蔡智宇. (. 分機. Chapter 14. Solan. aceae: . The Nightshade Family. Economically Important Members of the Nightshade Family. Tomato. : History, Uses. Potato: . Morphology, Nutritional Value, History, Uses. Solanaceae Family Characters. Sejong Bae, PhD, FMSSANZ, . Young-il Kim, PhD . Elizabeth Worthey, PhD. SEER. IC50. What we do. Biostatistics. The Biostatistics and Bioinformatics Shared Resource Facility (BSBI) strengthens the research capabilities and furthers the scientific rigor of cancer-related research by collaborating in all phases of protocol and grant development, data analysis and interpretation, and manuscript preparation at UAB O’Neal Comprehensive Cancer Center.. Jean-François Taly. People in the . BioCore. Jean-Francois. Luca. Toni. @CRG 2009. @. BioCore. 2012. Acting head. Structur. . . b. ioinfo. .. MSA. NGS analyst. Galaxy server. Training. @. BioCore. 2010. There exist different levels of computational methods for . describing metabolic networks:. - stoichiometry/kinetics of classical biochemical . pathways. (glycolysis, TCA cycle, .... - stoichiometric modelling (.