PPT-Sequences What is a sequence?

A list of numbers in a certain order What is a term One of the numbers in the sequence What is an arithmetic sequence A sequence in which each term is found by ADDING the same number to the previous term. By: Matt Connor. Fall 2013. Pure Math. Analysis. Calculus and Real Analysis . Sequences. Sequence- A list of numbers or objects in a specific order. 1,3,5,7,9,...... Finite Sequence- contains a finite number of terms. Utah State University – Spring . 2012. STAT 5570: Statistical Bioinformatics. Notes 6.1. 2. References. Chapters 2 & 7 of Biological Sequence Analysis (Durbin et al., 2001). . 3. Review. Genes are:. Tandy Warnow. The Department of Computer Science. The University of Texas at Austin. The “Tree of Life”. Avian Phylogenomics Project. G Zhang, . BGI. . Approx. 50 species, whole genomes. 8000+ genes, UCEs. Utah State University – Spring . 2012. STAT 5570: Statistical Bioinformatics. Notes 6.1. 2. References. Chapters 2 & 7 of Biological Sequence Analysis (Durbin et al., 2001). . 3. Review. Genes are:. Section 2.4. Section Summary. Sequences.. Examples: Geometric Progression, Arithmetic Progression. Recurrence Relations. Example: Fibonacci Sequence. Summations. Introduction. Sequences are ordered lists of elements. . Maya Schushan. November 2010. Outline- introduction to alignments. 1. . Introduction. 4. Pairwise Alignment:. Smith-Waterman. Needlman-Wunch. 5. Multiple Sequence Alignment:. ClustalW. MUSCLE. T-coffee. Formulas booklet page 3. In maths, we call a list of numbers in order a . sequence. .. Each number in a sequence is called a . term. .. 4, 8, 12, 16, 20, 24, 28, 32, . . .. 1. st. term. 6. th. term. Difference. Equations. (5.1) Sequences. (5.2) Limit of a Sequence . (5.3) Discrete Difference Equations. (5.4) Geometric & Arithmetic Sequences. (5.5) Linear Difference Equation with Constant Coefficients (scanned notes). Alshahrani. CS6800. Statistical Background : HMMs.. What is DNA Sequence. . How to get DNA Sequence.. DNA Sequence formats.. Analysis methods and tools.. What is next ?. HMMs. Hidden Markov Model (. Niroula. Department of Experimental Medical Science. Lund University. 1. 2015-12-09. Sequence alignment. A way of arranging . two or more sequences . to identify regions of . similarity. Shows locations of similarities and differences between . Niroula. Department of Experimental Medical Science. Lund University. 2015-12-10. 1. Sequence search. Sequences. Nucleotide and amino acid sequences. Known sequences are stored in different databases. Hardison. Genomics 4_2. Sources: Webb Miller (Penn State. ). Kun-Mao Chao and . Luxin. Zhang: . Sequence Comparisons, Theory . and Methods. , Springer 2008. Bill Pearson (U. Virginia. ). Vladimir . Likic. pair-wise alignment. × . multiple . sequence . alignment. Flavors of sequence alignment. global alignment . × . local alignment. global. local. align entire sequence. stretches of sequence with the highest density of matches . Goal: Given the sequence and secondary structure of an RNA, identify known 3D motifs in the hairpin and internal loops.. Craig L. Zirbel. Bowling Green State University. Bowling Green, Ohio. All new slides!.