PPT-1 Hidden Markov

Model HMM Tutorial Credit Prof BKShin Pukyung Natl Univ and Prof Wilensky UCB 2 Sequential Data Often highly variable but has an embedded structure Information is contained in the structure. Nimantha . Thushan. Baranasuriya. Girisha. . Durrel. De Silva. Rahul . Singhal. Karthik. . Yadati. Ziling. . Zhou. Outline. Random Walks. Markov Chains. Applications. 2SAT. 3SAT. Card Shuffling. (1). Brief . review of discrete time finite Markov . Chain. Hidden Markov . Model. Examples of HMM in Bioinformatics. Estimations. Basic Local Alignment Search Tool (BLAST). The strategy. Important parameters. Jean-Philippe Pellet. Andre . Ellisseeff. Presented by Na Dai. Motivation. Why structure . l. earning?. What are Markov blankets?. Relationship between feature selection and Markov blankets?. Previous work. Van Gael, et al. ICML 2008. Presented by Daniel Johnson. Introduction. Infinite Hidden Markov Model (. iHMM. ) is . n. onparametric approach to the HMM. New inference algorithm for . iHMM. Comparison with Gibbs sampling algorithm. Network. . Ben . Taskar. ,. . Carlos . Guestrin. Daphne . Koller. 2004. Topics Covered. Main Idea.. Problem Setting.. Structure in classification problems.. Markov Model.. SVM. Combining SVM and Markov Network.. 15 . Section . 3 . – . 4. Hidden Markov . Models. Terminology. Marginal Probability: . Joint Probability: . Conditional Probability: .  . It get’s big!. Conditional independence. Or equivalently: . Part 4. The Story so far …. Def:. Markov Chain: collection of states together with a matrix of probabilities called transition matrix (. p. ij. ) where . p. ij. indicates the probability of switching from state S. notes for. CSCI-GA.2590. Prof. Grishman. Markov Model . In principle each decision could depend on all the decisions which came before (the tags on all preceding words in the sentence). But we’ll make life simple by assuming that the decision depends on only the immediately preceding decision. Mark Stamp. 1. HMM. Hidden Markov Models. What is a hidden Markov model (HMM)?. A machine learning technique. A discrete hill climb technique. Where are . HMMs. used?. Speech recognition. Malware detection, IDS, etc., etc.. TO EVALUATE COST-EFFECTIVENESS. OF CERVICAL CANCER TREATMENTS. Un modelo de . Markov. en un árbol de . decisión para . un análisis . del . coste-efectividad . del tratamientos . de cáncer de cuello uterino. (part 1). 1. Haim Kaplan and Uri Zwick. Algorithms in Action. Tel Aviv University. Last updated: April . 15 . 2016. (Finite, Discrete time) Markov chain. 2. A sequence . of random variables.  . Each . Gordon Hazen. February 2012. Medical Markov Modeling. We think of Markov chain models as the province of operations research analysts. However …. The number of publications in medical journals . using Markov models. Hidden Markov Models IP notice: slides from Dan Jurafsky Outline Markov Chains Hidden Markov Models Three Algorithms for HMMs The Forward Algorithm The Viterbi Algorithm The Baum-Welch (EM Algorithm) Zane Goodwin. 3/20/13. What is a Hidden Markov Model?. A . H. idden Markov Model (HMM) . is a type of unsupervised machine learning algorithm.. With respect to genome annotation, HMMs label individual nucleotides with a .