PPT-Transcription regulation

Dr Vladimir Teif BS222 Genome Science Lecture 4 Module structure Genomes sequencing projects and genomic databases VT Oct 9 2018 Sequencing technologies VT Oct 11 2018 Genome architecture I protein coding genes VT Oct 16 2018. Tim . Johnstone. BIOL1220. Spring 2010. Transcription Factor. a protein that binds to specific DNA . sequences to modulate the transcription of DNA to mRNA. The transcription factor TATA binding protein (blue) bound to DNA (red). Image by David S. . 7. 7 RNA Synthesis and Processing. Chapter Outline. Transcription in Prokaryotes. Eukaryotic RNA Polymerases and General Transcription Factors. Regulation of Transcription in Eukaryotes. RNA Processing and Turnover. Central Dogma of Biology. Information flows from . DNA .  RNA  Proteins. Think of it as exchanging money in a different country: proteins cannot be built directly from DNA. Three main processes involved:. DNA. RNA. PROTEIN. RNA and Transcription. RNA. R. ibo. n. ucleic . A. cid. another type of nucleic acid similar to DNA found in cells. also a polymer made of nucleotides. takes information from the nucleus to the rest of the cell. Humming transcription. Our front-end for music search. Goal: Convert humming into an MIDI note sequence. Steps involved in humming transcription. Track pitch over the humming input. Identify notes via silence. Understanding:. Gene expression is regulated by proteins that bind to specific base sequences in DNA . The environment of a cell and of an organism has an impact on gene expression. Nucleosomes help to regulate transcription in eukaryotes. C483 Spring 2013. 1. RNA Polymerase. Polymerizes RNA in a 3’. 5’ direction.. Has 3’5’ . exonuclease. activity. Has 5’3’ . exonuclease. activity. Catalyzes a reaction driven by pyrophosphate hydrolysis. (TZD) . in . adipocytes. Kyoung-Jae Won, . Ph.D.. Sep 8 . 2014 . . Genomics 2014. Non-coding RNA Annotation in ENSEMBL. tRNA. Mt-. tRNA. rRNA. scRNA. snRNA. snoRNA. miRNA. Misc_RNA. lincRNA. eRNA. (enhancer driven RNA). Learning Objectives. Learn what a ‘transcription factor’ is.. Learn how oestrogen affects gene transcription.. Learn what siRNA is and how it affects gene expression.. Recap of 15.1. That the cells in our bodies are highly . BNFO 602/691. Biological Sequence Analysis. Mark Reimers, VIPBG. Why TFBS?. Protein transcription factors were among the first gene regulators identified. Many TFBS have distinct sequences, which were suitable for bioinformatics analysis. Gene Expression Group. 7/14/11. 2011 National Academies Northstar Institute for Undergraduate Education in Biology . Outline. Context. Review: Clicker Questions. Cell Differences (Think-Pair-Share). Regulation of Gene Expression (Mini-Lecture). Pre-transcriptional regulation. chromatin compaction . eg. . deacetylation. , . methylation. transcriptional initiation . ie. transcription factors to activate or repress. alternative promoters =. Draw 8 boxes on your paper. Gene regulation accounts for some of the phenotypic differences between organisms with similar genes.. 2005-2006. Gene regulation in bacteria. Control of gene expression enables individual bacteria to adjust their metabolism to environmental change. Mamoun Ahram, PhD. 1. Resources. This lecture. Cooper, Chapter 8. Regulation. of transcription in prokaryotes . The lac operon. 3. Metabolism of lactose. In the 1950s, pioneering experiments were carried out by François Jacob and Jacques Monod who studied regulation of gene transcription in E. coli by analyzing the expression of enzymes involved in the metabolism of lactose. .