Scientific IT Services Michal Okoniewski, Samuel

Scientific IT Services Michal Okoniewski, Samuel
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Scientific IT Services Michal Okoniewski, Samuel Fux, Manuel Kohler 112217 1 High Performance Computing for genomic applications Snakemake example with genomic data Michal Okoniewski, Scientific IT ETH Workflow management system Designed

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01
Scientific IT Services
Michal Okoniewski, Samuel Fux, Manuel Kohler 11/22/17 1 High Performance Computing for genomic applications Snakemake example with genomic data Michal Okoniewski, Scientific IT ETH<br>
02
Workflow management system
Designed by Johannes Köster
Now PI at UniEssen
Python3 – based
cmake philosophy
conda installation
conda support
http://snakemake.readthedocs.io/ 11/22/17 Michal Okoniewski, Scientific IT ETH 2 Snakemake<br>
03
Snakefile – set of rules<br>