PPT-Clustering Clustering Preliminaries

Log 2 transformation Row centering and normalization Filtering Log 2 Transformation Log 2 transformation makes sure that the noise is independent of the mean and similar differences have the same meaning along the dynamic range of the values. Adapted from Chapter 3. Of. Lei Tang and . Huan. Liu’s . Book. Slides prepared by . Qiang. Yang, . UST, . HongKong. 1. Chapter 3, Community Detection and Mining in Social Media.  Lei Tang and Huan Liu, Morgan & Claypool, September, 2010. . Hierarchical Clustering . Produces a set of . nested clusters . organized as a hierarchical tree. Can be visualized as a . dendrogram. A tree-like diagram that records the sequences of merges or splits. 1. Unsupervised Learning and Clustering. In unsupervised learning you are given a data set with no output classifications. Clustering is an important type of unsupervised learning. PCA was another type of unsupervised learning. Machine . Learning . 10-601. , Fall . 2014. Bhavana. . Dalvi. Mishra. PhD student LTI, CMU. Slides are based . on materials . from . Prof. . Eric Xing, Prof. . . William Cohen and Prof. Andrew Ng. and Physical Interaction . Datasets. Manikandan Narayanan, Adrian Vetta, Eric E. Schadt, Jun Zhu. PLoS Computational Biology 2010. Presented by: Tal Saiag. Seminar in Algorithmic Challenges in Analyzing Big Data* in Biology and . April 22, 2010. Last Time. GMM Model Adaptation. MAP (Maximum A Posteriori). MLLR (Maximum Likelihood Linear Regression). UMB-. MAP. for speaker recognition. Today. Graph Based Clustering. Minimum Cut. Brendan and Yifang . April . 21 . 2015. Pre-knowledge. We define a set A, and we find the element that minimizes the error. We can think of as a sample of . Where is the point in C closest to X. . Sushmita Roy. sroy@biostat.wisc.edu. Computational Network Biology. Biostatistics & Medical Informatics 826. Computer Sciences 838. https://compnetbiocourse.discovery.wisc.edu. Nov 3. rd. 2016. RECAP. issue in . computing a representative simplicial complex. . Mapper does . not place any conditions on the clustering . algorithm. Thus . any domain-specific clustering algorithm can . be used.. We . to . LC-MS Data Analysis.  . October 7 2013. . IEEE . International Conference on Big Data 2013 (IEEE . BigData. 2013. ). Santa Clara CA. Geoffrey Fox, D. R. Mani, . Saumyadipta. . Pyne. gcf@indiana.edu. K. Ramachandra Murthy. Email. : k.ramachandra@isical.ac.in. Course Overview. Preliminaries. 2. Preliminaries (2 classes). Introduction to Pattern Recognition (1 class). Clustering (3 . classes. ) . Dimensionality Reduction. 1. Mark Stamp. K-Means for Malware Classification. Clustering Applications. 2. Chinmayee. . Annachhatre. Mark Stamp. Quest for the Holy . Grail. Holy Grail of malware research is to detect previously unseen malware. Produces a set of . nested clusters . organized as a hierarchical tree. Can be visualized as a . dendrogram. A . tree-like . diagram that records the sequences of merges or splits. Strengths of Hierarchical Clustering. Produces a set of . nested clusters . organized as a hierarchical tree. Can be visualized as a . dendrogram. A tree-like diagram that records the sequences of merges or splits. Strengths of Hierarchical Clustering.