PPT-Analysis of Affymetrix and

Author : ash | Published Date : 2023-10-28

Illumina Array Data SPH 247 Statistical Analysis of Laboratory Data 1 May 7 2010 SPH 247 Statistical Analysis of Laboratory Data Basic Design of Expression Arrays

Presentation Embed Code

Download Presentation

Download Presentation The PPT/PDF document "Analysis of Affymetrix and" is the property of its rightful owner. Permission is granted to download and print the materials on this website for personal, non-commercial use only, and to display it on your personal computer provided you do not modify the materials and that you retain all copyright notices contained in the materials. By downloading content from our website, you accept the terms of this agreement.

Analysis of Affymetrix and: Transcript

Illumina Array Data SPH 247 Statistical Analysis of Laboratory Data 1 May 7 2010 SPH 247 Statistical Analysis of Laboratory Data Basic Design of Expression Arrays For each gene that is a target for the array we have a known DNA sequence. We offer the following analysis services: Failure Analysis / Condition Assessment / Life Assessment; Replication Tape Evaluation. Ph. D. .. Affymetrix. . Probeset. Mapping and . Medicago. Genome Annotation (Mt4.0 RC1). About . Affymetrix. . Medicago. . GeneChip. Mapping . Algorithm and Tool. Bioinformatics . Resources . for . The Zhao Bioinformatics Lab. pzhao@noble.org. Mapping Affymetrix Medicago GeneChip Probe sets to IMGAG 3.0 Genes. About Affymetrix Medicago GeneChip. Mapping Approach . Bioinformatics & Data Resources for Medicago IMGAG Release V3. in the Human Genome. Redon et. al.. Presentation By. Nguyen Dinh. Samer Metri. What are CNVs?. CNVs are segments of DNA that are 1kb or larger and show up at variable copy numbers.. CNVs can include both deletions and duplications. hypoxic inflammatory environment. Mahmood. Bhutta. TWJ & . Colledge. . Family . Memorial Otology Fellow. University . of Western Australia. Royal Perth . Hospital. James . Ramsden. Steve Brown. BMI/IBGP 730 . . Kun Huang. Department of Biomedical Informatics. The Ohio State University. Autumn 2010. Introduction to . gene expression . microarray. A . middle-man’s . approach. Applications of microarray. Transcriptomics – towards RNASeq Federico M. Giorgi – federico.giorgi@gmail.com Analisi del Genoma e Bioinformatica Corso di Laurea Specialistica in Biotecnologie delle piante Microarrays. Established. in 2006. as a center . supporting. . functional. . genomics. . research. in . nation and . internationwide. Comprehensive and . state. . of. . the . art. . functional. Amy Caudy. Lewis-Sigler Fellow. Outline . Microarray platforms. Uses of microarrays . Labeling approaches . Experimental considerations . Emerging technologies . Hybridization – the fundamental principle of array analysis. Yun Lian. 04-27-2012. GeneSpring. Layout. Organization of Elements. Project. : a container for a collection of exp.. Experiment. : a collection of samples for which arrays have been run in order to answer a specific scientific question.. public dataset. Jean-Yves Sgro. ArrayStar. Part of . Lasergene. Genomics Suite. for analysis:. Global gene expression. Variation across groups. Optional . Qseq. module to analyze RNA-. Seq. , . ChIP-Seq. Peptide intensity vs m/z. Previous Lecture: . Proteomics Informatics. Gene Expression Analysis (I). This Lecture. Learning Objectives. Microarray experimental details. Microarray data formats. QC analysis and data exploration. Table1SamplesusedinthestudySampletypesPatientsgroupsMethodsNormalTubularadenomaTubulovillousadenomaAdeno-carcinomaFFtissuebiopsyn=20n=11n=9n=20MicroarrayMatchedplasman=4n=4n=4n=4MicroarrayFFtissuebiop 2040G1G1G2G26080100120140160 GeneChip Specifications Feature size Standard format Oligo length25mers Probe pairs/gene~ Detection SensitivityPoly A controlsdap, lys, phe, thr, trpYeast controlsActin,

Download Document

Here is the link to download the presentation.
"Analysis of Affymetrix and"The content belongs to its owner. You may download and print it for personal use, without modification, and keep all copyright notices. By downloading, you agree to these terms.