PPT-Introduction to Microarray Data Analysis

BMIIBGP 730 Kun Huang Department of Biomedical Informatics The Ohio State University Autumn 2010 Introduction to gene expression microarray A middlemans approach Applications of microarray. Witten Department of Statistics Stanford University Stanford CA 94305 USA dwittenstanfordedu Robert Tibshirani Department of Health Research Policy and Department of Statistics Stanford University Stanford CA 94305 USA November 17 2007 Abstract It BioSys. course: DNA Microarray . Analysis – Lecture, . 2007. Analysis of Array CGH Data. by Hanni Willenbrock. 1. Outline. Introduction to comparative genomic hybridization (CGH) and array CGH. Data analysis approaches. Alan Ma. O&G Meeting. 12. th. November 2014. Aims. Role of microarray in prenatal testing. How we decipher the microarray results. Common scenarios. Unrelated/incidental findings of significance. Data QualityPratThiru1OutlineIntroductionExamples and Interpreting QC ReportsBatch EffectsTools available for QCMicroarrayShort-ReadsWork Flow2Consequences of not Assessing the DataIncreased variabili Microarray . Analysis and Omics Technology. Introduction. Approximately humans have 25000 genes. Only . a fraction of these are actively expressed as mRNAs at any one time. . Hybridization between the cDNA reverse transcribed from a biological sample to a pre-designed complementary DNA probe arranged on a slide, or array, is the basis of DNA microarrays.. MICRO ARRAY (BIOCHIPS). A . semiconductor . device. It . is used to detect the DNA makeup of a human cell. .. M. icro . arrays contain millions of DNA strands designed to . pair . with their other half as the liquefied human cells are poured over . Transcriptomic. (and other . omic. ) Data Analysis in Bioinformatics. Outline. What is . transcriptome. Basic techniques to obtain . transcriptomic. data. Computational . and statistical methods involved in . Microarray . Analysis and Omics Technology. Introduction. Approximately humans have 25000 genes. Only . a fraction of these are actively expressed as mRNAs at any one time. . Hybridization between the cDNA reverse transcribed from a biological sample to a pre-designed complementary DNA probe arranged on a slide, or array, is the basis of DNA microarrays.. and . Data Analysis . Roy Williams . PhD . Sanford | Burnham Medical Research Institute . Microarray Revolution. Idea. : measure the amount of. . mRNA. . to see which. . genes. . are being. . expressed. Outline. Introduction. Two review papers. Quality control (. MetaQC. ). Meta-analysis for detecting differentially expressed genes (. MetaDE. ). Meta-analysis for detecting pathways (. MetaPath. ). 1. Introduction. The Benefits of Reading Books,Most people read to read and the benefits of reading are surplus. But what are the benefits of reading. Keep reading to find out how reading will help you and may even add years to your life!.The Benefits of Reading Books,What are the benefits of reading you ask? Down below we have listed some of the most common benefits and ones that you will definitely enjoy along with the new adventures provided by the novel you choose to read.,Exercise the Brain by Reading .When you read, your brain gets a workout. You have to remember the various characters, settings, plots and retain that information throughout the book. Your brain is doing a lot of work and you don’t even realize it. Which makes it the perfect exercise! Pharmacogenomics. . Yuhua Li, MD., PhD.. Shanghai Biotechnology Corporation (SBC). . global_market@shbiochip.com. . Shanghai Biochip Co., Ltd. / National Engineering Center for Biochip at Shanghai . Shilpa. . Kaistha. Department of Microbiology. Institute of Biosciences & Biotechnology. CSJM University, Kanpur. Microarrays can be used in many types of experiments including . Genotyping. epigenetics. MBI401-High throughput Data analysis. Mamta Sagar. Department of Bioinformatics. UIET-IBSBT, CSJM University, Kanpur. 1. INTRODUCTION. Functional genomics involves the analysis of large datasets of information derived from various biological experiments. One such type of large-scale experiment involves monitoring the expression levels of thousands of genes simultaneously under a particular condition,.